miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27043 3' -49.8 NC_005832.1 + 860 0.66 0.990524
Target:  5'- uUCCAGUCCUUgc-CGCaGGUGccCCUGg -3'
miRNA:   3'- -GGGUCAGGAAauuGUG-CCGUauGGAC- -5'
27043 3' -49.8 NC_005832.1 + 55538 0.66 0.990524
Target:  5'- uCCCAGUCCc----CACGGCAggagACa-- -3'
miRNA:   3'- -GGGUCAGGaaauuGUGCCGUa---UGgac -5'
27043 3' -49.8 NC_005832.1 + 42123 0.66 0.989141
Target:  5'- cCUCGGUCCUgguccagcACACGGCcgaACCg- -3'
miRNA:   3'- -GGGUCAGGAaau-----UGUGCCGua-UGGac -5'
27043 3' -49.8 NC_005832.1 + 97285 0.66 0.989141
Target:  5'- gUCCAGgCuCUUUGcCACGGCGUcuGCCg- -3'
miRNA:   3'- -GGGUCaG-GAAAUuGUGCCGUA--UGGac -5'
27043 3' -49.8 NC_005832.1 + 96202 0.66 0.989141
Target:  5'- aCCAGUCCggUgacggcccacGACACGGCGcACaUGa -3'
miRNA:   3'- gGGUCAGGaaA----------UUGUGCCGUaUGgAC- -5'
27043 3' -49.8 NC_005832.1 + 89230 0.66 0.98728
Target:  5'- aUCAGUCCUacucUUGcugcucggcuccCACGGCGUACcCUGg -3'
miRNA:   3'- gGGUCAGGA----AAUu-----------GUGCCGUAUG-GAC- -5'
27043 3' -49.8 NC_005832.1 + 43279 0.67 0.977293
Target:  5'- uCCCAG-CCUgacgguggccAGCACGGCcucCCUGg -3'
miRNA:   3'- -GGGUCaGGAaa--------UUGUGCCGuauGGAC- -5'
27043 3' -49.8 NC_005832.1 + 51724 0.67 0.977293
Target:  5'- aUUAGUCC----ACACGGCGUcaaaggccGCCUGa -3'
miRNA:   3'- gGGUCAGGaaauUGUGCCGUA--------UGGAC- -5'
27043 3' -49.8 NC_005832.1 + 58821 0.68 0.974635
Target:  5'- gCCuGUCCUa-AACAUGGCAaaUGCCa- -3'
miRNA:   3'- gGGuCAGGAaaUUGUGCCGU--AUGGac -5'
27043 3' -49.8 NC_005832.1 + 32105 0.68 0.971758
Target:  5'- aCCAGUUCUcUAGgGCGGUcaGCCUc -3'
miRNA:   3'- gGGUCAGGAaAUUgUGCCGuaUGGAc -5'
27043 3' -49.8 NC_005832.1 + 97350 0.68 0.965313
Target:  5'- gCCAGUaggcagGACACGGCcgagGCCUGc -3'
miRNA:   3'- gGGUCAggaaa-UUGUGCCGua--UGGAC- -5'
27043 3' -49.8 NC_005832.1 + 41033 0.69 0.949467
Target:  5'- aCCCGGucgugguccccUCCUUUGGCAgGGC---CCUGg -3'
miRNA:   3'- -GGGUC-----------AGGAAAUUGUgCCGuauGGAC- -5'
27043 3' -49.8 NC_005832.1 + 32216 0.7 0.92373
Target:  5'- aCUGGUCCcugAACcCGGCGUgGCCUGg -3'
miRNA:   3'- gGGUCAGGaaaUUGuGCCGUA-UGGAC- -5'
27043 3' -49.8 NC_005832.1 + 79209 0.71 0.883947
Target:  5'- gUCCAGUCCcgcaUAcCugGGCGUACaCUGu -3'
miRNA:   3'- -GGGUCAGGaa--AUuGugCCGUAUG-GAC- -5'
27043 3' -49.8 NC_005832.1 + 10088 0.72 0.835099
Target:  5'- aUCCucuuGUCCUUgaccucgGACACGGCGUACa-- -3'
miRNA:   3'- -GGGu---CAGGAAa------UUGUGCCGUAUGgac -5'
27043 3' -49.8 NC_005832.1 + 39809 0.73 0.81705
Target:  5'- aCCGGUCCU--AGCGgGGC--GCCUGg -3'
miRNA:   3'- gGGUCAGGAaaUUGUgCCGuaUGGAC- -5'
27043 3' -49.8 NC_005832.1 + 97024 0.76 0.67407
Target:  5'- uCCCAGUCCUacGugGUGGCGgACCUGg -3'
miRNA:   3'- -GGGUCAGGAaaUugUGCCGUaUGGAC- -5'
27043 3' -49.8 NC_005832.1 + 17365 1.12 0.005044
Target:  5'- gCCCAGUCCUUUAACACGGCAUACCUGg -3'
miRNA:   3'- -GGGUCAGGAAAUUGUGCCGUAUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.