miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27043 5' -54.4 NC_005832.1 + 52214 0.66 0.871169
Target:  5'- uGCacauGUuuGCCAcgGCCAGGAGCCAc -3'
miRNA:   3'- uCGcu--CAugUGGUa-CGGUCUUCGGUu -5'
27043 5' -54.4 NC_005832.1 + 1552 0.66 0.863261
Target:  5'- gAGCcugGAGUGCGCCAUGgCCAucucGCCGu -3'
miRNA:   3'- -UCG---CUCAUGUGGUAC-GGUcuu-CGGUu -5'
27043 5' -54.4 NC_005832.1 + 11577 0.66 0.846748
Target:  5'- cGGCaaGAcGUGCACCGUgGUCAGcguGGCCGAa -3'
miRNA:   3'- -UCG--CU-CAUGUGGUA-CGGUCu--UCGGUU- -5'
27043 5' -54.4 NC_005832.1 + 13466 0.66 0.838159
Target:  5'- -aCGAGUACGCgGUGCCccugucccAGAuGGCCGg -3'
miRNA:   3'- ucGCUCAUGUGgUACGG--------UCU-UCGGUu -5'
27043 5' -54.4 NC_005832.1 + 12090 0.67 0.82936
Target:  5'- gGGCGGGguagacggGCACgGUGCCGGcGGCa-- -3'
miRNA:   3'- -UCGCUCa-------UGUGgUACGGUCuUCGguu -5'
27043 5' -54.4 NC_005832.1 + 19521 0.67 0.820359
Target:  5'- uGUG-GUuCACUAUGCCAGcgGAGCCGc -3'
miRNA:   3'- uCGCuCAuGUGGUACGGUC--UUCGGUu -5'
27043 5' -54.4 NC_005832.1 + 11944 0.67 0.811165
Target:  5'- -aCGAGga-GCCcgGCCAGA-GCCAGg -3'
miRNA:   3'- ucGCUCaugUGGuaCGGUCUuCGGUU- -5'
27043 5' -54.4 NC_005832.1 + 79511 0.67 0.801789
Target:  5'- aGGUGGGUAgAaagAUGUCGGggGCCAGg -3'
miRNA:   3'- -UCGCUCAUgUgg-UACGGUCuuCGGUU- -5'
27043 5' -54.4 NC_005832.1 + 29433 0.68 0.762661
Target:  5'- cGGCgGAGUGuggcucCACCAUGCCAGGuuccCCGAg -3'
miRNA:   3'- -UCG-CUCAU------GUGGUACGGUCUuc--GGUU- -5'
27043 5' -54.4 NC_005832.1 + 4281 0.68 0.742273
Target:  5'- uGCGAGUGCACCGUGaCu---GCCGu -3'
miRNA:   3'- uCGCUCAUGUGGUACgGucuuCGGUu -5'
27043 5' -54.4 NC_005832.1 + 9675 0.68 0.731911
Target:  5'- cGGCGAGU--GCCAUGCCccaGGAGGUa-- -3'
miRNA:   3'- -UCGCUCAugUGGUACGG---UCUUCGguu -5'
27043 5' -54.4 NC_005832.1 + 46074 0.68 0.731911
Target:  5'- cAGgGAGUGCGCCuuuauagaGCaGGGAGCCGAc -3'
miRNA:   3'- -UCgCUCAUGUGGua------CGgUCUUCGGUU- -5'
27043 5' -54.4 NC_005832.1 + 47257 0.68 0.731911
Target:  5'- aAGCGAGUGC-CCugggGCCAGGAcCCu- -3'
miRNA:   3'- -UCGCUCAUGuGGua--CGGUCUUcGGuu -5'
27043 5' -54.4 NC_005832.1 + 29241 0.69 0.689601
Target:  5'- aGGaCGGGUucgGCGCCcgGCCuGggGUCAAa -3'
miRNA:   3'- -UC-GCUCA---UGUGGuaCGGuCuuCGGUU- -5'
27043 5' -54.4 NC_005832.1 + 76284 0.71 0.59224
Target:  5'- aGGCaGAG-GCACCuGUGCCAG-GGCCAAu -3'
miRNA:   3'- -UCG-CUCaUGUGG-UACGGUCuUCGGUU- -5'
27043 5' -54.4 NC_005832.1 + 11326 0.71 0.560048
Target:  5'- gAGCGuGgcCACCAUGagcgCGGAGGCCAu -3'
miRNA:   3'- -UCGCuCauGUGGUACg---GUCUUCGGUu -5'
27043 5' -54.4 NC_005832.1 + 36521 0.84 0.101675
Target:  5'- aGGCGGcGUACGCCAggGCCGGggGCCAc -3'
miRNA:   3'- -UCGCU-CAUGUGGUa-CGGUCuuCGGUu -5'
27043 5' -54.4 NC_005832.1 + 17330 1.06 0.002927
Target:  5'- gAGCGAGUACACCAUGCCAGAAGCCAAg -3'
miRNA:   3'- -UCGCUCAUGUGGUACGGUCUUCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.