miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27044 3' -55.9 NC_005832.1 + 98559 0.66 0.82242
Target:  5'- gAGCccAGCAGCAcucuUGCCUcccgUCGGCAGa -3'
miRNA:   3'- -UCG--UCGUCGUu---GCGGGaca-AGUCGUC- -5'
27044 3' -55.9 NC_005832.1 + 71755 0.66 0.813397
Target:  5'- uGGUAgGCGGCGGCGCCgCUag-CGGCGa -3'
miRNA:   3'- -UCGU-CGUCGUUGCGG-GAcaaGUCGUc -5'
27044 3' -55.9 NC_005832.1 + 47596 0.66 0.804193
Target:  5'- cGCGGCcGCcAUGCCCg--UCAGgCAGa -3'
miRNA:   3'- uCGUCGuCGuUGCGGGacaAGUC-GUC- -5'
27044 3' -55.9 NC_005832.1 + 18187 0.66 0.794819
Target:  5'- ---nGCAGCAGCGCCCUGUg------ -3'
miRNA:   3'- ucguCGUCGUUGCGGGACAagucguc -5'
27044 3' -55.9 NC_005832.1 + 18103 0.66 0.794819
Target:  5'- ---nGCAGCAGCGCCCUGUg------ -3'
miRNA:   3'- ucguCGUCGUUGCGGGACAagucguc -5'
27044 3' -55.9 NC_005832.1 + 18145 0.66 0.794819
Target:  5'- ---nGCAGCAGCGCCCUGUg------ -3'
miRNA:   3'- ucguCGUCGUUGCGGGACAagucguc -5'
27044 3' -55.9 NC_005832.1 + 2458 0.66 0.785284
Target:  5'- cAGCAGUAGgAGUGUCCgUGUUugaCAGCGGg -3'
miRNA:   3'- -UCGUCGUCgUUGCGGG-ACAA---GUCGUC- -5'
27044 3' -55.9 NC_005832.1 + 43321 0.66 0.773645
Target:  5'- cAGCcuGGCGGgAGCGCCCUcaaagaagccCGGCAGg -3'
miRNA:   3'- -UCG--UCGUCgUUGCGGGAcaa-------GUCGUC- -5'
27044 3' -55.9 NC_005832.1 + 47551 0.67 0.725277
Target:  5'- uGUGGCcGgGACGCuCCUGggCAGCAa -3'
miRNA:   3'- uCGUCGuCgUUGCG-GGACaaGUCGUc -5'
27044 3' -55.9 NC_005832.1 + 44144 0.68 0.683376
Target:  5'- cGCGGgAcuguGCGACGCUCUGUggauacCGGCGGg -3'
miRNA:   3'- uCGUCgU----CGUUGCGGGACAa-----GUCGUC- -5'
27044 3' -55.9 NC_005832.1 + 35871 0.68 0.662106
Target:  5'- aAGCAGCAGCAGCcCCCgucUUCuGCc- -3'
miRNA:   3'- -UCGUCGUCGUUGcGGGac-AAGuCGuc -5'
27044 3' -55.9 NC_005832.1 + 6638 0.69 0.608634
Target:  5'- cGCAGaUAGCGGgGCuCCUGggcCAGCAGu -3'
miRNA:   3'- uCGUC-GUCGUUgCG-GGACaa-GUCGUC- -5'
27044 3' -55.9 NC_005832.1 + 102055 0.69 0.608634
Target:  5'- gAGCAGCGGCAugGCUCaGgagaCGGUAa -3'
miRNA:   3'- -UCGUCGUCGUugCGGGaCaa--GUCGUc -5'
27044 3' -55.9 NC_005832.1 + 11489 0.71 0.51421
Target:  5'- -aCAGCAGCAGCuCCCUGUacggggugucuUCGGaCAGg -3'
miRNA:   3'- ucGUCGUCGUUGcGGGACA-----------AGUC-GUC- -5'
27044 3' -55.9 NC_005832.1 + 86328 0.74 0.356124
Target:  5'- gAGCAGCAGCAGgaGCCUgcagagCAGCAGc -3'
miRNA:   3'- -UCGUCGUCGUUg-CGGGacaa--GUCGUC- -5'
27044 3' -55.9 NC_005832.1 + 86286 0.74 0.356124
Target:  5'- gAGCAGCAGCAGgaGCCUgcagagCAGCAGc -3'
miRNA:   3'- -UCGUCGUCGUUg-CGGGacaa--GUCGUC- -5'
27044 3' -55.9 NC_005832.1 + 18314 0.74 0.356124
Target:  5'- cAGCAaCAGCAGCGUCCUGcucaaggaCAGCAGu -3'
miRNA:   3'- -UCGUcGUCGUUGCGGGACaa------GUCGUC- -5'
27044 3' -55.9 NC_005832.1 + 18061 0.84 0.080413
Target:  5'- ---nGCAGCAACGCCCUGUcCAGCAGc -3'
miRNA:   3'- ucguCGUCGUUGCGGGACAaGUCGUC- -5'
27044 3' -55.9 NC_005832.1 + 17977 0.92 0.023032
Target:  5'- ---nGCAGCAACGCCCUGUUCAGCAGc -3'
miRNA:   3'- ucguCGUCGUUGCGGGACAAGUCGUC- -5'
27044 3' -55.9 NC_005832.1 + 18035 0.99 0.007043
Target:  5'- cAGCAGCAGCGACGCCCUGUcCAGCAGc -3'
miRNA:   3'- -UCGUCGUCGUUGCGGGACAaGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.