miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27044 5' -50.1 NC_005832.1 + 1513 0.67 0.971107
Target:  5'- -cCUGggGucGGGAGCcgccAGCCUCaCUgCCg -3'
miRNA:   3'- gaGACuuU--UUCUCGu---UCGGAG-GAgGG- -5'
27044 5' -50.1 NC_005832.1 + 4927 0.71 0.881584
Target:  5'- ---gGAGAAAGgacGGCGAGCCcgagacgaugCCUCCCg -3'
miRNA:   3'- gagaCUUUUUC---UCGUUCGGa---------GGAGGG- -5'
27044 5' -50.1 NC_005832.1 + 5522 0.67 0.971107
Target:  5'- --aUGAGGGAGGGCAgGGUCUCUUCg- -3'
miRNA:   3'- gagACUUUUUCUCGU-UCGGAGGAGgg -5'
27044 5' -50.1 NC_005832.1 + 5912 0.67 0.979271
Target:  5'- uUCgacggGGAcGAGGGCAA-CCUcuaCCUCCCg -3'
miRNA:   3'- gAGa----CUUuUUCUCGUUcGGA---GGAGGG- -5'
27044 5' -50.1 NC_005832.1 + 6693 0.68 0.964519
Target:  5'- ---gGAGAuagacGGGGGCAggaggAGCCUCC-CCCa -3'
miRNA:   3'- gagaCUUU-----UUCUCGU-----UCGGAGGaGGG- -5'
27044 5' -50.1 NC_005832.1 + 6840 0.69 0.92788
Target:  5'- -cCUGggGuaguGGGgGAGgCUCCUCCUg -3'
miRNA:   3'- gaGACuuUuu--CUCgUUCgGAGGAGGG- -5'
27044 5' -50.1 NC_005832.1 + 7593 0.71 0.857836
Target:  5'- --gUGGGAAAGAcuGCGAGCCUCgagcuggaUCCCg -3'
miRNA:   3'- gagACUUUUUCU--CGUUCGGAGg-------AGGG- -5'
27044 5' -50.1 NC_005832.1 + 8057 0.82 0.314542
Target:  5'- --aUGAGAAGGGGCAGGCC-CaCUCCCa -3'
miRNA:   3'- gagACUUUUUCUCGUUCGGaG-GAGGG- -5'
27044 5' -50.1 NC_005832.1 + 8997 0.66 0.987156
Target:  5'- uUCUGGGuccaaaacAGGAaccgccuGCAGGCCUCCUUgCu -3'
miRNA:   3'- gAGACUUu-------UUCU-------CGUUCGGAGGAGgG- -5'
27044 5' -50.1 NC_005832.1 + 9721 0.74 0.700704
Target:  5'- cCUCcGAAGAaccguagGGAGCAgacagcuccAGCCUgCCUCCCu -3'
miRNA:   3'- -GAGaCUUUU-------UCUCGU---------UCGGA-GGAGGG- -5'
27044 5' -50.1 NC_005832.1 + 10421 0.72 0.813677
Target:  5'- uUCUGGGAcgcggugagGAGGGCGAaCCUCUUUCCg -3'
miRNA:   3'- gAGACUUU---------UUCUCGUUcGGAGGAGGG- -5'
27044 5' -50.1 NC_005832.1 + 10566 0.67 0.976768
Target:  5'- aCUCccgGAAAGAG-GUucGcCCUCCUCaCCg -3'
miRNA:   3'- -GAGa--CUUUUUCuCGuuC-GGAGGAG-GG- -5'
27044 5' -50.1 NC_005832.1 + 10810 0.67 0.976768
Target:  5'- -cCUGAGGu-GGGuCAuGCCggugCCUCCCa -3'
miRNA:   3'- gaGACUUUuuCUC-GUuCGGa---GGAGGG- -5'
27044 5' -50.1 NC_005832.1 + 11013 0.66 0.988894
Target:  5'- gUCaGggGGAGGGUGAGCUaCCUCa- -3'
miRNA:   3'- gAGaCuuUUUCUCGUUCGGaGGAGgg -5'
27044 5' -50.1 NC_005832.1 + 15030 0.7 0.896151
Target:  5'- aUCUGAAGAAauccaGGCGuuGUCUCCUCCg -3'
miRNA:   3'- gAGACUUUUUc----UCGUu-CGGAGGAGGg -5'
27044 5' -50.1 NC_005832.1 + 15288 0.67 0.975164
Target:  5'- gUCUGAAAAguAGcGGCAcaggacuucgaugugGGCCUC-UCCCu -3'
miRNA:   3'- gAGACUUUU--UC-UCGU---------------UCGGAGgAGGG- -5'
27044 5' -50.1 NC_005832.1 + 15630 0.66 0.988592
Target:  5'- aCUCUGcucggugucGGAGCAGacgauGCgCUCCUCCg -3'
miRNA:   3'- -GAGACuuuu-----UCUCGUU-----CG-GAGGAGGg -5'
27044 5' -50.1 NC_005832.1 + 17942 1.14 0.003177
Target:  5'- cCUCUGAAAAAGAGCAAGCCUCCUCCCa -3'
miRNA:   3'- -GAGACUUUUUCUCGUUCGGAGGAGGG- -5'
27044 5' -50.1 NC_005832.1 + 19751 0.67 0.967933
Target:  5'- gCUUUGggGGAG-GCAGGUUcCC-CCCg -3'
miRNA:   3'- -GAGACuuUUUCuCGUUCGGaGGaGGG- -5'
27044 5' -50.1 NC_005832.1 + 22930 0.69 0.930123
Target:  5'- aUCUGGAAAAGucuucgGGCAccacucguaccccgcAGCCUCCagaCCCc -3'
miRNA:   3'- gAGACUUUUUC------UCGU---------------UCGGAGGa--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.