miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27045 5' -56.8 NC_005832.1 + 2129 0.66 0.73495
Target:  5'- cGUGguGCuGGCccccauauucGGCGAgGCCCUGUcgGUg -3'
miRNA:   3'- aCACguCG-UCG----------UCGUUgCGGGACA--CG- -5'
27045 5' -56.8 NC_005832.1 + 4481 0.68 0.619619
Target:  5'- -uUGCG--GGCAGCGACGUCUcGUGCu -3'
miRNA:   3'- acACGUcgUCGUCGUUGCGGGaCACG- -5'
27045 5' -56.8 NC_005832.1 + 6488 0.7 0.532635
Target:  5'- cGgagGCGGCggaugacgaggacgGGguGUcuGugGCCCUGUGCg -3'
miRNA:   3'- aCa--CGUCG--------------UCguCG--UugCGGGACACG- -5'
27045 5' -56.8 NC_005832.1 + 6975 0.67 0.724744
Target:  5'- gGUGCAGUuuguuacggcgGGCacGGCAugGaCCCUcagagGUGCu -3'
miRNA:   3'- aCACGUCG-----------UCG--UCGUugC-GGGA-----CACG- -5'
27045 5' -56.8 NC_005832.1 + 7289 0.69 0.612193
Target:  5'- --cGCGGCGGCGGUccuguguccgggagaGGCuguggguGUCCUGUGCg -3'
miRNA:   3'- acaCGUCGUCGUCG---------------UUG-------CGGGACACG- -5'
27045 5' -56.8 NC_005832.1 + 7787 0.68 0.640855
Target:  5'- gGUGCAGguCGGCGGC-ACuCCCgGUGUa -3'
miRNA:   3'- aCACGUC--GUCGUCGuUGcGGGaCACG- -5'
27045 5' -56.8 NC_005832.1 + 11483 0.69 0.587862
Target:  5'- cGUGaaaCAGCAGCAGCuCCCUGUa- -3'
miRNA:   3'- aCACgucGUCGUCGUUGcGGGACAcg -5'
27045 5' -56.8 NC_005832.1 + 13862 0.66 0.73495
Target:  5'- --aGUAGCAGUcgAGCuccAGCGCCCUgcccGUGUc -3'
miRNA:   3'- acaCGUCGUCG--UCG---UUGCGGGA----CACG- -5'
27045 5' -56.8 NC_005832.1 + 16925 0.66 0.755064
Target:  5'- cGUGgAGCAGguGCAGgcCGCCCc---- -3'
miRNA:   3'- aCACgUCGUCguCGUU--GCGGGacacg -5'
27045 5' -56.8 NC_005832.1 + 17979 0.73 0.383348
Target:  5'- ------nCAGCAGCAACGCCCUGUucaGCa -3'
miRNA:   3'- acacgucGUCGUCGUUGCGGGACA---CG- -5'
27045 5' -56.8 NC_005832.1 + 18004 0.95 0.013014
Target:  5'- --aGCAGCAGCAGCAACGCCCUGUucaGCa -3'
miRNA:   3'- acaCGUCGUCGUCGUUGCGGGACA---CG- -5'
27045 5' -56.8 NC_005832.1 + 18037 0.94 0.014182
Target:  5'- --aGCAGCAGCAGCGACGCCCUGUccaGCa -3'
miRNA:   3'- acaCGUCGUCGUCGUUGCGGGACA---CG- -5'
27045 5' -56.8 NC_005832.1 + 18070 1.03 0.003466
Target:  5'- cUGUGCAGCAGCAGCAACGCCCUGUccaGCa -3'
miRNA:   3'- -ACACGUCGUCGUCGUUGCGGGACA---CG- -5'
27045 5' -56.8 NC_005832.1 + 18087 0.66 0.784332
Target:  5'- ---nCAGCAGCAGCAACGCCn----- -3'
miRNA:   3'- acacGUCGUCGUCGUUGCGGgacacg -5'
27045 5' -56.8 NC_005832.1 + 18112 1.12 0.000751
Target:  5'- cUGUGCAGCAGCAGCAGCGCCCUGUGCa -3'
miRNA:   3'- -ACACGUCGUCGUCGUUGCGGGACACG- -5'
27045 5' -56.8 NC_005832.1 + 18129 0.66 0.784332
Target:  5'- ---nCAGCAGCAGCAACGCCn----- -3'
miRNA:   3'- acacGUCGUCGUCGUUGCGGgacacg -5'
27045 5' -56.8 NC_005832.1 + 18154 1.12 0.000751
Target:  5'- cUGUGCAGCAGCAGCAGCGCCCUGUGCa -3'
miRNA:   3'- -ACACGUCGUCGUCGUUGCGGGACACG- -5'
27045 5' -56.8 NC_005832.1 + 18171 0.66 0.784332
Target:  5'- ---nCAGCAGCAGCAGCGCCn----- -3'
miRNA:   3'- acacGUCGUCGUCGUUGCGGgacacg -5'
27045 5' -56.8 NC_005832.1 + 18196 1.12 0.000751
Target:  5'- cUGUGCAGCAGCAGCAGCGCCCUGUGCa -3'
miRNA:   3'- -ACACGUCGUCGUCGUUGCGGGACACG- -5'
27045 5' -56.8 NC_005832.1 + 18214 0.74 0.311223
Target:  5'- --aGCAGCAGCAGCAGCGCCn----- -3'
miRNA:   3'- acaCGUCGUCGUCGUUGCGGgacacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.