miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27046 5' -58.5 NC_005832.1 + 105505 0.66 0.749261
Target:  5'- gACCGUCUGGCCcgugACC-GUgCUUCu -3'
miRNA:   3'- gUGGCAGGCCGGaua-UGGaCGgGAGG- -5'
27046 5' -58.5 NC_005832.1 + 44752 0.66 0.749261
Target:  5'- aCGCUGUCCcagcaGUCUAUGCCaGCCUcuuucgccgcuUCCg -3'
miRNA:   3'- -GUGGCAGGc----CGGAUAUGGaCGGG-----------AGG- -5'
27046 5' -58.5 NC_005832.1 + 89303 0.66 0.749261
Target:  5'- aGCC-UCCaGGCaCUugacgACCUGCCCUUUc -3'
miRNA:   3'- gUGGcAGG-CCG-GAua---UGGACGGGAGG- -5'
27046 5' -58.5 NC_005832.1 + 39410 0.66 0.748293
Target:  5'- -uCCGUCUGcGCCcgcggggccccuuUAcgccguuccUGCCUGCCCUgCCg -3'
miRNA:   3'- guGGCAGGC-CGG-------------AU---------AUGGACGGGA-GG- -5'
27046 5' -58.5 NC_005832.1 + 56887 0.66 0.743435
Target:  5'- gCGgUGUCUGGCCUAaACCUGgCgcaguacgccuacguCUCCa -3'
miRNA:   3'- -GUgGCAGGCCGGAUaUGGACgG---------------GAGG- -5'
27046 5' -58.5 NC_005832.1 + 80005 0.66 0.739532
Target:  5'- gGCCGcCCucuCCUcgGCCUGCuCCUCg -3'
miRNA:   3'- gUGGCaGGcc-GGAuaUGGACG-GGAGg -5'
27046 5' -58.5 NC_005832.1 + 99988 0.66 0.739532
Target:  5'- aGCCcauUUCGGCCUuugccuugACCUG-CCUCCu -3'
miRNA:   3'- gUGGc--AGGCCGGAua------UGGACgGGAGG- -5'
27046 5' -58.5 NC_005832.1 + 65577 0.66 0.7198
Target:  5'- cCACgGUUCGGagagacGCCUGCCCUUg -3'
miRNA:   3'- -GUGgCAGGCCggaua-UGGACGGGAGg -5'
27046 5' -58.5 NC_005832.1 + 33037 0.66 0.7198
Target:  5'- aCACCGUgUCGGCCgcacccACCgUGUCCgCCg -3'
miRNA:   3'- -GUGGCA-GGCCGGaua---UGG-ACGGGaGG- -5'
27046 5' -58.5 NC_005832.1 + 77167 0.66 0.7198
Target:  5'- uCACCGgcgaUCGGCCcgAcGCCgaggUGCCCUUCu -3'
miRNA:   3'- -GUGGCa---GGCCGGa-UaUGG----ACGGGAGG- -5'
27046 5' -58.5 NC_005832.1 + 97881 0.66 0.709816
Target:  5'- gACCGUCCGGCUcggGCacacGCCC-CUa -3'
miRNA:   3'- gUGGCAGGCCGGauaUGga--CGGGaGG- -5'
27046 5' -58.5 NC_005832.1 + 10604 0.67 0.699766
Target:  5'- aCGCUGUacUCGGCCagguUCUGCCCggCCa -3'
miRNA:   3'- -GUGGCA--GGCCGGauauGGACGGGa-GG- -5'
27046 5' -58.5 NC_005832.1 + 14290 0.67 0.699766
Target:  5'- aGCCGUcaaaCCGGCCaagACCgaggacacguUGUCCUCUg -3'
miRNA:   3'- gUGGCA----GGCCGGauaUGG----------ACGGGAGG- -5'
27046 5' -58.5 NC_005832.1 + 78621 0.67 0.689658
Target:  5'- aACCGUCCacgGGCCUGacggACCUuaGCCuCUUUa -3'
miRNA:   3'- gUGGCAGG---CCGGAUa---UGGA--CGG-GAGG- -5'
27046 5' -58.5 NC_005832.1 + 20668 0.67 0.689658
Target:  5'- uUACCGcCCuGGUgaGggcCCUGCCUUCCg -3'
miRNA:   3'- -GUGGCaGG-CCGgaUau-GGACGGGAGG- -5'
27046 5' -58.5 NC_005832.1 + 13114 0.67 0.679503
Target:  5'- gCGCCcuuuUCCaucagGGCCUGcuuCCUGCaCCUCCu -3'
miRNA:   3'- -GUGGc---AGG-----CCGGAUau-GGACG-GGAGG- -5'
27046 5' -58.5 NC_005832.1 + 56008 0.67 0.669308
Target:  5'- aGCCGUacgCGGcCCUGgguCUUGCCC-CCg -3'
miRNA:   3'- gUGGCAg--GCC-GGAUau-GGACGGGaGG- -5'
27046 5' -58.5 NC_005832.1 + 43157 0.67 0.659083
Target:  5'- cCACCGUCaGGCUgggaaaggGCCUGCCgggCUUCu -3'
miRNA:   3'- -GUGGCAGgCCGGaua-----UGGACGG---GAGG- -5'
27046 5' -58.5 NC_005832.1 + 79073 0.67 0.648836
Target:  5'- -cCCGUCCaGCCUG-ACgCUGacaaCCCUCCc -3'
miRNA:   3'- guGGCAGGcCGGAUaUG-GAC----GGGAGG- -5'
27046 5' -58.5 NC_005832.1 + 98185 0.68 0.618048
Target:  5'- uCACCuucgGUCUGGCCgacGCCUGaggaCCUUCg -3'
miRNA:   3'- -GUGG----CAGGCCGGauaUGGACg---GGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.