miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27048 3' -50 NC_005832.1 + 40415 0.66 0.987993
Target:  5'- gUC-CAACGACAccaGGGCcgacaUUGCGAGGg -3'
miRNA:   3'- aAGaGUUGUUGUa--CCUGa----GACGCUCC- -5'
27048 3' -50 NC_005832.1 + 50683 0.66 0.987993
Target:  5'- gUCUCAGCGGCGUcaaGGCgg-GCGAGa -3'
miRNA:   3'- aAGAGUUGUUGUAc--CUGagaCGCUCc -5'
27048 3' -50 NC_005832.1 + 23736 0.66 0.982443
Target:  5'- gUCUaCGACAGaCAUGGAC--UGgGAGGu -3'
miRNA:   3'- aAGA-GUUGUU-GUACCUGagACgCUCC- -5'
27048 3' -50 NC_005832.1 + 65993 0.67 0.98022
Target:  5'- --gUCAugGGCuUGGAgUCgGCGGGGu -3'
miRNA:   3'- aagAGUugUUGuACCUgAGaCGCUCC- -5'
27048 3' -50 NC_005832.1 + 40761 0.67 0.978789
Target:  5'- --gUgGACAGCcUGGACUCUaccgacaggggugacGCGGGGu -3'
miRNA:   3'- aagAgUUGUUGuACCUGAGA---------------CGCUCC- -5'
27048 3' -50 NC_005832.1 + 66988 0.67 0.974877
Target:  5'- -cCUCAggACGGCcaGGACUuccaaacgucccgCUGCGAGGg -3'
miRNA:   3'- aaGAGU--UGUUGuaCCUGA-------------GACGCUCC- -5'
27048 3' -50 NC_005832.1 + 96499 0.68 0.962294
Target:  5'- --gUCAGCcaggGACcUGGACUCUGCgguaGAGGc -3'
miRNA:   3'- aagAGUUG----UUGuACCUGAGACG----CUCC- -5'
27048 3' -50 NC_005832.1 + 6315 0.68 0.958466
Target:  5'- -cCUCGAgAACGgaggGGACgcgGCGGGGa -3'
miRNA:   3'- aaGAGUUgUUGUa---CCUGagaCGCUCC- -5'
27048 3' -50 NC_005832.1 + 23092 0.68 0.95438
Target:  5'- cUUCUCAGgGGucUGGAggCUGCGGGGu -3'
miRNA:   3'- -AAGAGUUgUUguACCUgaGACGCUCC- -5'
27048 3' -50 NC_005832.1 + 32125 0.68 0.94958
Target:  5'- -aUUCAGCAugAUGGGCgaagaggacugccUgUGCGGGGc -3'
miRNA:   3'- aaGAGUUGUugUACCUG-------------AgACGCUCC- -5'
27048 3' -50 NC_005832.1 + 38348 0.7 0.898583
Target:  5'- cUUCUCAACGACAcccUGGGCaugccagaCUGUGAGu -3'
miRNA:   3'- -AAGAGUUGUUGU---ACCUGa-------GACGCUCc -5'
27048 3' -50 NC_005832.1 + 101849 0.71 0.852242
Target:  5'- cUUCUCAACGGCA--GACUCuuucuccucugcUGUGAGGg -3'
miRNA:   3'- -AAGAGUUGUUGUacCUGAG------------ACGCUCC- -5'
27048 3' -50 NC_005832.1 + 91933 0.73 0.78788
Target:  5'- cUCcCGAgGACAgGGAcCUCUGCGGGGu -3'
miRNA:   3'- aAGaGUUgUUGUaCCU-GAGACGCUCC- -5'
27048 3' -50 NC_005832.1 + 23903 1.08 0.007484
Target:  5'- cUUCUCAACAACAUGGACUCUGCGAGGu -3'
miRNA:   3'- -AAGAGUUGUUGUACCUGAGACGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.