miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27049 5' -59.9 NC_005832.1 + 831 0.75 0.222058
Target:  5'- aGCCCGAgGCgcacgucugcucCCCCAGGuUCCaGUCCu -3'
miRNA:   3'- aCGGGCUgUGa-----------GGGGUCC-AGGaCAGG- -5'
27049 5' -59.9 NC_005832.1 + 1221 0.68 0.533588
Target:  5'- gGCCCGACGCcgugugCgCCAGGUaCUuUCCa -3'
miRNA:   3'- aCGGGCUGUGa-----GgGGUCCAgGAcAGG- -5'
27049 5' -59.9 NC_005832.1 + 2095 0.72 0.317639
Target:  5'- cGUCCGACcCUCCCaucGcCCUGUCCa -3'
miRNA:   3'- aCGGGCUGuGAGGGgucCaGGACAGG- -5'
27049 5' -59.9 NC_005832.1 + 5151 0.67 0.587467
Target:  5'- -aCCUGACGugagaucccuuucccCUgCCCAGGacCCUGUCCa -3'
miRNA:   3'- acGGGCUGU---------------GAgGGGUCCa-GGACAGG- -5'
27049 5' -59.9 NC_005832.1 + 5940 0.67 0.603654
Target:  5'- -uCCCGcAgGgUCCCCAGG-CCagGUCCg -3'
miRNA:   3'- acGGGC-UgUgAGGGGUCCaGGa-CAGG- -5'
27049 5' -59.9 NC_005832.1 + 7160 0.68 0.52379
Target:  5'- gUGcCCCGGCGCUCCCgAuccGGUgagagagucCCUcGUCCu -3'
miRNA:   3'- -AC-GGGCUGUGAGGGgU---CCA---------GGA-CAGG- -5'
27049 5' -59.9 NC_005832.1 + 10261 0.66 0.674696
Target:  5'- gGCaggGACAC-CCCCAGGUCCa---- -3'
miRNA:   3'- aCGgg-CUGUGaGGGGUCCAGGacagg -5'
27049 5' -59.9 NC_005832.1 + 10624 0.67 0.613801
Target:  5'- cUGCCCGGCcaucCUCCUaaccugacuCGGGuUCCUGgccUCCg -3'
miRNA:   3'- -ACGGGCUGu---GAGGG---------GUCC-AGGAC---AGG- -5'
27049 5' -59.9 NC_005832.1 + 10721 0.66 0.684773
Target:  5'- uUGCUaaaGauguuGCGgUCCCCGGcGUCCUGgUCCc -3'
miRNA:   3'- -ACGGg--C-----UGUgAGGGGUC-CAGGAC-AGG- -5'
27049 5' -59.9 NC_005832.1 + 15674 0.72 0.310494
Target:  5'- aGaCCauaaaGACAUaUCCCAGGUCCUuGUCCa -3'
miRNA:   3'- aC-GGg----CUGUGaGGGGUCCAGGA-CAGG- -5'
27049 5' -59.9 NC_005832.1 + 15814 0.66 0.654447
Target:  5'- cUGCCgggagaGGCGCUCCaagAGGcCCUGUCg -3'
miRNA:   3'- -ACGGg-----CUGUGAGGgg-UCCaGGACAGg -5'
27049 5' -59.9 NC_005832.1 + 19850 0.74 0.245733
Target:  5'- gGCCUGACGgUCCCCcugacGGUCUUGgCCg -3'
miRNA:   3'- aCGGGCUGUgAGGGGu----CCAGGACaGG- -5'
27049 5' -59.9 NC_005832.1 + 26577 1.1 0.000741
Target:  5'- cUGCCCGACACUCCCCAGGUCCUGUCCc -3'
miRNA:   3'- -ACGGGCUGUGAGGGGUCCAGGACAGG- -5'
27049 5' -59.9 NC_005832.1 + 27025 0.68 0.553371
Target:  5'- cUGCUCG-CACgUCCUCAGGcCCgcgaaacGUCCg -3'
miRNA:   3'- -ACGGGCuGUG-AGGGGUCCaGGa------CAGG- -5'
27049 5' -59.9 NC_005832.1 + 32289 0.7 0.411998
Target:  5'- cGCCacggGACACucgcuguccagggUCCCCguGGGaCCUGUCCa -3'
miRNA:   3'- aCGGg---CUGUG-------------AGGGG--UCCaGGACAGG- -5'
27049 5' -59.9 NC_005832.1 + 33948 0.69 0.475939
Target:  5'- gGCCuUGACGCUCUCCAGaUCCUcugCCu -3'
miRNA:   3'- aCGG-GCUGUGAGGGGUCcAGGAca-GG- -5'
27049 5' -59.9 NC_005832.1 + 34211 0.72 0.313337
Target:  5'- gGCCCuGACuguggacgauguggaGCUCCaCCuGGUCuCUGUCCu -3'
miRNA:   3'- aCGGG-CUG---------------UGAGG-GGuCCAG-GACAGG- -5'
27049 5' -59.9 NC_005832.1 + 35298 0.69 0.485342
Target:  5'- aUGCCCGugACUggcuUCCacgucggaGGGccCCUGUCCg -3'
miRNA:   3'- -ACGGGCugUGA----GGGg-------UCCa-GGACAGG- -5'
27049 5' -59.9 NC_005832.1 + 39096 0.67 0.573368
Target:  5'- cGUCCGGgA--CCCCAGGUUCacgGUCCc -3'
miRNA:   3'- aCGGGCUgUgaGGGGUCCAGGa--CAGG- -5'
27049 5' -59.9 NC_005832.1 + 39720 0.67 0.613801
Target:  5'- -aUCCGGCcuCUCCUgCAGGUCCccuggGUCCu -3'
miRNA:   3'- acGGGCUGu-GAGGG-GUCCAGGa----CAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.