miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2705 3' -57.9 NC_001491.2 + 123035 0.66 0.859658
Target:  5'- cGGCAGCGAgACCGcGugC-GCCgCGGu -3'
miRNA:   3'- -CUGUCGCUaUGGCuCugGaCGG-GCCc -5'
2705 3' -57.9 NC_001491.2 + 114691 0.66 0.852039
Target:  5'- gGACAuGCGG-GCCcAGGCCgaggGCCuCGGGu -3'
miRNA:   3'- -CUGU-CGCUaUGGcUCUGGa---CGG-GCCC- -5'
2705 3' -57.9 NC_001491.2 + 146438 0.66 0.844229
Target:  5'- gGAC-GCGG-ACCGAGggcGCCgggGCCuCGGGc -3'
miRNA:   3'- -CUGuCGCUaUGGCUC---UGGa--CGG-GCCC- -5'
2705 3' -57.9 NC_001491.2 + 148962 0.66 0.844229
Target:  5'- cGCGGCGGaggGCCuGGGCCacGCCgGGGc -3'
miRNA:   3'- cUGUCGCUa--UGGcUCUGGa-CGGgCCC- -5'
2705 3' -57.9 NC_001491.2 + 146390 0.66 0.836234
Target:  5'- cGGCAGCGGcggccuggGCCGGGuaGCCgGCCaCGGcGg -3'
miRNA:   3'- -CUGUCGCUa-------UGGCUC--UGGaCGG-GCC-C- -5'
2705 3' -57.9 NC_001491.2 + 145338 0.66 0.836234
Target:  5'- cGGCcgGGCGAUccccuCCGgaGGACg-GCCCGGGa -3'
miRNA:   3'- -CUG--UCGCUAu----GGC--UCUGgaCGGGCCC- -5'
2705 3' -57.9 NC_001491.2 + 144918 0.66 0.836234
Target:  5'- cGCGGCGAgccccggaGCCG-GGCUgggUGCCgGGGa -3'
miRNA:   3'- cUGUCGCUa-------UGGCuCUGG---ACGGgCCC- -5'
2705 3' -57.9 NC_001491.2 + 148057 0.66 0.82806
Target:  5'- --gGGCGuugaggGCCGAGAC--GUCCGGGg -3'
miRNA:   3'- cugUCGCua----UGGCUCUGgaCGGGCCC- -5'
2705 3' -57.9 NC_001491.2 + 110789 0.66 0.82806
Target:  5'- --gAGCGAaGCCGcGGGCCccagucGCCUGGGu -3'
miRNA:   3'- cugUCGCUaUGGC-UCUGGa-----CGGGCCC- -5'
2705 3' -57.9 NC_001491.2 + 140096 0.66 0.82806
Target:  5'- --gAGCGGcGCCG-GGCC-GCCCGcGGa -3'
miRNA:   3'- cugUCGCUaUGGCuCUGGaCGGGC-CC- -5'
2705 3' -57.9 NC_001491.2 + 115816 0.67 0.817179
Target:  5'- cGGCGGCccagGCCGGagccucGGCCUccuucuccucguccGCCCGGGg -3'
miRNA:   3'- -CUGUCGcua-UGGCU------CUGGA--------------CGGGCCC- -5'
2705 3' -57.9 NC_001491.2 + 139897 0.67 0.793726
Target:  5'- ---uGCGcGUACUG-GugCUGCCUGGGa -3'
miRNA:   3'- cuguCGC-UAUGGCuCugGACGGGCCC- -5'
2705 3' -57.9 NC_001491.2 + 111083 0.67 0.784771
Target:  5'- gGACAGCGAUggggacACCGA-ACCUGCCgauguuagCGGc -3'
miRNA:   3'- -CUGUCGCUA------UGGCUcUGGACGG--------GCCc -5'
2705 3' -57.9 NC_001491.2 + 117964 0.67 0.775685
Target:  5'- aGGCGGCGAggagGAGACCccucGCCCGcGGc -3'
miRNA:   3'- -CUGUCGCUauggCUCUGGa---CGGGC-CC- -5'
2705 3' -57.9 NC_001491.2 + 115542 0.67 0.775685
Target:  5'- -cCAGCuGUuccCCGAGGCCUggcGCCCGGc -3'
miRNA:   3'- cuGUCGcUAu--GGCUCUGGA---CGGGCCc -5'
2705 3' -57.9 NC_001491.2 + 116045 0.67 0.775685
Target:  5'- aGCGGCGGaggcGCCGGGgcuacgaccgccACCUGCugCCGGGc -3'
miRNA:   3'- cUGUCGCUa---UGGCUC------------UGGACG--GGCCC- -5'
2705 3' -57.9 NC_001491.2 + 37880 0.68 0.74772
Target:  5'- -cCAGCGGcACCcacGGCUUGUCCGGGc -3'
miRNA:   3'- cuGUCGCUaUGGcu-CUGGACGGGCCC- -5'
2705 3' -57.9 NC_001491.2 + 110528 0.68 0.738191
Target:  5'- -uCAGCGuguCCGuGACCUGCaaCGGGc -3'
miRNA:   3'- cuGUCGCuauGGCuCUGGACGg-GCCC- -5'
2705 3' -57.9 NC_001491.2 + 147730 0.69 0.709107
Target:  5'- uGCAGCGG-GCCGcgaugguGGCCaggGCCUGGGg -3'
miRNA:   3'- cUGUCGCUaUGGCu------CUGGa--CGGGCCC- -5'
2705 3' -57.9 NC_001491.2 + 93040 0.69 0.689389
Target:  5'- gGACAGCGu---UGAGAUCUGgCUGGGa -3'
miRNA:   3'- -CUGUCGCuaugGCUCUGGACgGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.