miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2705 5' -57.1 NC_001491.2 + 114683 0.66 0.886875
Target:  5'- gGGCCC-AGg--CCGagggCCUCGGgUUCCa -3'
miRNA:   3'- -UCGGGcUCaaaGGUa---GGAGCCgGAGG- -5'
2705 5' -57.1 NC_001491.2 + 45394 0.66 0.872862
Target:  5'- uGGCCUGuuGUUgacuuggCCugGUCCUUGGCCuggUCCu -3'
miRNA:   3'- -UCGGGCu-CAAa------GG--UAGGAGCCGG---AGG- -5'
2705 5' -57.1 NC_001491.2 + 148552 0.66 0.872862
Target:  5'- aAGUCCGGGUcguggaacCCGaggcCCUCGGCCUgggcCCg -3'
miRNA:   3'- -UCGGGCUCAaa------GGUa---GGAGCCGGA----GG- -5'
2705 5' -57.1 NC_001491.2 + 80740 0.66 0.865536
Target:  5'- --aCUGGGggcaCAUCCcuagCGGCCUCCa -3'
miRNA:   3'- ucgGGCUCaaagGUAGGa---GCCGGAGG- -5'
2705 5' -57.1 NC_001491.2 + 134172 0.66 0.850273
Target:  5'- uGGCCuCcAGUUUCCGguucagcuguUCCauaagcggaUCGGUCUCCa -3'
miRNA:   3'- -UCGG-GcUCAAAGGU----------AGG---------AGCCGGAGG- -5'
2705 5' -57.1 NC_001491.2 + 146894 0.67 0.842348
Target:  5'- aGGCCCGGGc--CCGggcccCCUCGGCgUUg -3'
miRNA:   3'- -UCGGGCUCaaaGGUa----GGAGCCGgAGg -5'
2705 5' -57.1 NC_001491.2 + 145558 0.67 0.834235
Target:  5'- cGGCCCGGcGgagaagCCAUCCccgcgggcgguUCGGgCCUCUc -3'
miRNA:   3'- -UCGGGCU-Caaa---GGUAGG-----------AGCC-GGAGG- -5'
2705 5' -57.1 NC_001491.2 + 64011 0.67 0.825943
Target:  5'- cGGCgCCGAGaacgagCguUCCcaCGGCCUCCc -3'
miRNA:   3'- -UCG-GGCUCaaa---GguAGGa-GCCGGAGG- -5'
2705 5' -57.1 NC_001491.2 + 33596 0.67 0.817478
Target:  5'- uAGCCUGGGgaauaGUUCUgCGGCCUCg -3'
miRNA:   3'- -UCGGGCUCaaaggUAGGA-GCCGGAGg -5'
2705 5' -57.1 NC_001491.2 + 115776 0.67 0.806228
Target:  5'- cGCCCGGGggUaCgAUcCCUCGGggccggucgacagcCCUCCg -3'
miRNA:   3'- uCGGGCUCaaA-GgUA-GGAGCC--------------GGAGG- -5'
2705 5' -57.1 NC_001491.2 + 116625 0.67 0.80006
Target:  5'- uGGCCUGccAGg--CCGUCUUCGaggcccuccugcGCCUCCg -3'
miRNA:   3'- -UCGGGC--UCaaaGGUAGGAGC------------CGGAGG- -5'
2705 5' -57.1 NC_001491.2 + 56364 0.68 0.791124
Target:  5'- gAGCCCucguGGUUUUCAUCCaaGGCCaggugggCCg -3'
miRNA:   3'- -UCGGGc---UCAAAGGUAGGagCCGGa------GG- -5'
2705 5' -57.1 NC_001491.2 + 145695 0.68 0.763509
Target:  5'- cGGCCgucugCGGGg--CC-UCCUCGGCCggugCCu -3'
miRNA:   3'- -UCGG-----GCUCaaaGGuAGGAGCCGGa---GG- -5'
2705 5' -57.1 NC_001491.2 + 80113 0.68 0.754063
Target:  5'- cGCCgGuGUUUCCAaaguuaaCUUCGGCCaucUCCa -3'
miRNA:   3'- uCGGgCuCAAAGGUa------GGAGCCGG---AGG- -5'
2705 5' -57.1 NC_001491.2 + 95439 0.69 0.695492
Target:  5'- cGCCaCGAGUcugUCCAUCaggCGGCCg-- -3'
miRNA:   3'- uCGG-GCUCAa--AGGUAGga-GCCGGagg -5'
2705 5' -57.1 NC_001491.2 + 37852 0.7 0.655286
Target:  5'- uGCUCGcGUUaUCCAcUCCUCcaucguucaaGGCCUCCg -3'
miRNA:   3'- uCGGGCuCAA-AGGU-AGGAG----------CCGGAGG- -5'
2705 5' -57.1 NC_001491.2 + 93557 0.71 0.614786
Target:  5'- uGCCauGGUUUCCGUCCa-GGCC-CCg -3'
miRNA:   3'- uCGGgcUCAAAGGUAGGagCCGGaGG- -5'
2705 5' -57.1 NC_001491.2 + 147407 0.72 0.525052
Target:  5'- gAGgCCGAGgcUCCggCCUgGGCCgCCg -3'
miRNA:   3'- -UCgGGCUCaaAGGuaGGAgCCGGaGG- -5'
2705 5' -57.1 NC_001491.2 + 116791 0.73 0.477316
Target:  5'- cAGCCCGAGgccCCGgcgcCCUCGGUCcgcgUCCg -3'
miRNA:   3'- -UCGGGCUCaaaGGUa---GGAGCCGG----AGG- -5'
2705 5' -57.1 NC_001491.2 + 116319 0.75 0.388971
Target:  5'- gGGCCCGGGc--CCGggCCUCGGCCUg- -3'
miRNA:   3'- -UCGGGCUCaaaGGUa-GGAGCCGGAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.