Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27050 | 3' | -48.6 | NC_005832.1 | + | 75201 | 0.66 | 0.993141 |
Target: 5'- uGCCUaCUggcaGGGcAAGGUcAGGAGGGGAu- -3' miRNA: 3'- -UGGA-GAa---CUC-UUUCA-UUCUCCCCUuu -5' |
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27050 | 3' | -48.6 | NC_005832.1 | + | 9836 | 0.66 | 0.993141 |
Target: 5'- uUCUUcgGAGGAGGggAGGuGGGGAGAc -3' miRNA: 3'- uGGAGaaCUCUUUCa-UUCuCCCCUUU- -5' |
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27050 | 3' | -48.6 | NC_005832.1 | + | 29327 | 0.68 | 0.971534 |
Target: 5'- uACCUCaUGAccGAG-GAGAGGGGAc- -3' miRNA: 3'- -UGGAGaACUcuUUCaUUCUCCCCUuu -5' |
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27050 | 3' | -48.6 | NC_005832.1 | + | 66171 | 0.7 | 0.943481 |
Target: 5'- aACCUCUUGG---GGUGGGAGGGa--- -3' miRNA: 3'- -UGGAGAACUcuuUCAUUCUCCCcuuu -5' |
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27050 | 3' | -48.6 | NC_005832.1 | + | 21259 | 0.7 | 0.932977 |
Target: 5'- gGCCUUUagGAGAAAGUGGGGacGGGGu-- -3' miRNA: 3'- -UGGAGAa-CUCUUUCAUUCU--CCCCuuu -5' |
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27050 | 3' | -48.6 | NC_005832.1 | + | 17062 | 0.71 | 0.901678 |
Target: 5'- gUCUCUgGAGAagAAGaaUGGGAGGGGAAGa -3' miRNA: 3'- uGGAGAaCUCU--UUC--AUUCUCCCCUUU- -5' |
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27050 | 3' | -48.6 | NC_005832.1 | + | 29274 | 0.73 | 0.837345 |
Target: 5'- aACCUCUUGGGAgcGUAcucGGGGAAc -3' miRNA: 3'- -UGGAGAACUCUuuCAUucuCCCCUUu -5' |
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27050 | 3' | -48.6 | NC_005832.1 | + | 27120 | 0.76 | 0.660356 |
Target: 5'- gGCCUCc-GGGAAAGgucgAGGAGGGGAc- -3' miRNA: 3'- -UGGAGaaCUCUUUCa---UUCUCCCCUuu -5' |
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27050 | 3' | -48.6 | NC_005832.1 | + | 27498 | 0.92 | 0.09463 |
Target: 5'- aACCUCUU-AGAAAGUAAGAGGGGAAAa -3' miRNA: 3'- -UGGAGAAcUCUUUCAUUCUCCCCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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