miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27050 5' -55.8 NC_005832.1 + 69311 0.66 0.855275
Target:  5'- gGCUUCacccaggagGUCUCCUaaACAGUCUCCAGuGa -3'
miRNA:   3'- gUGAGG---------CAGGGGG--UGUUAGAGGUCuC- -5'
27050 5' -55.8 NC_005832.1 + 62157 0.66 0.838916
Target:  5'- -gUUCUGcuUCCCCCACAccCUCCAGc- -3'
miRNA:   3'- guGAGGC--AGGGGGUGUuaGAGGUCuc -5'
27050 5' -55.8 NC_005832.1 + 53886 0.66 0.830437
Target:  5'- aGgUCCGcuUCCCCCGCGccgggcauGUCUCCAu-- -3'
miRNA:   3'- gUgAGGC--AGGGGGUGU--------UAGAGGUcuc -5'
27050 5' -55.8 NC_005832.1 + 54135 0.66 0.830437
Target:  5'- aGCcccagCC-UCCUCCACAG-CUCCAGGGc -3'
miRNA:   3'- gUGa----GGcAGGGGGUGUUaGAGGUCUC- -5'
27050 5' -55.8 NC_005832.1 + 49059 0.66 0.830437
Target:  5'- gGCUCCGacgUCCUCGCGuug-CCAGAGa -3'
miRNA:   3'- gUGAGGCa--GGGGGUGUuagaGGUCUC- -5'
27050 5' -55.8 NC_005832.1 + 43679 0.67 0.821768
Target:  5'- -uCUCCGUCCCCaagagagcaCACAGacagCUCCuGGGc -3'
miRNA:   3'- guGAGGCAGGGG---------GUGUUa---GAGGuCUC- -5'
27050 5' -55.8 NC_005832.1 + 1472 0.67 0.812919
Target:  5'- -uCUCUGUCCCCCAUc--CUgUAGAGc -3'
miRNA:   3'- guGAGGCAGGGGGUGuuaGAgGUCUC- -5'
27050 5' -55.8 NC_005832.1 + 11897 0.67 0.803898
Target:  5'- gGCUCCGUCUCCCAUAG-CgggCCGc-- -3'
miRNA:   3'- gUGAGGCAGGGGGUGUUaGa--GGUcuc -5'
27050 5' -55.8 NC_005832.1 + 43259 0.67 0.785374
Target:  5'- gCACggCC-UCCCUgGguGUCUCCAGGGa -3'
miRNA:   3'- -GUGa-GGcAGGGGgUguUAGAGGUCUC- -5'
27050 5' -55.8 NC_005832.1 + 9854 0.68 0.766273
Target:  5'- gCugUCUGcUCCCUACGGUuCUUCGGAGg -3'
miRNA:   3'- -GugAGGCaGGGGGUGUUA-GAGGUCUC- -5'
27050 5' -55.8 NC_005832.1 + 9561 0.68 0.75653
Target:  5'- gCACUcgCCGUCUcuCCUAUggUCUCCAcGGGa -3'
miRNA:   3'- -GUGA--GGCAGG--GGGUGuuAGAGGU-CUC- -5'
27050 5' -55.8 NC_005832.1 + 95500 0.68 0.736707
Target:  5'- aGCggCCaggGUCCCCgGgacacccuCAGUCUCCAGAGg -3'
miRNA:   3'- gUGa-GG---CAGGGGgU--------GUUAGAGGUCUC- -5'
27050 5' -55.8 NC_005832.1 + 5560 0.69 0.675264
Target:  5'- gGCUUCGggcaCCCCCACcucguccaCUCCAGGGu -3'
miRNA:   3'- gUGAGGCa---GGGGGUGuua-----GAGGUCUC- -5'
27050 5' -55.8 NC_005832.1 + 2876 0.7 0.653338
Target:  5'- gCACUCUGgcgugaCCCCCACAGcCUuuguggaCCGGAGg -3'
miRNA:   3'- -GUGAGGCa-----GGGGGUGUUaGA-------GGUCUC- -5'
27050 5' -55.8 NC_005832.1 + 22951 0.7 0.643912
Target:  5'- cCACU-CGUaCCCCGCAGcCUCCAGAc -3'
miRNA:   3'- -GUGAgGCAgGGGGUGUUaGAGGUCUc -5'
27050 5' -55.8 NC_005832.1 + 87460 0.7 0.63343
Target:  5'- gGCcgaCGUCUCCCACcucGUCUCCAGGa -3'
miRNA:   3'- gUGag-GCAGGGGGUGu--UAGAGGUCUc -5'
27050 5' -55.8 NC_005832.1 + 39631 0.73 0.47064
Target:  5'- -cCUCCuGUCCugCCCACAG-CUCCAGGGu -3'
miRNA:   3'- guGAGG-CAGG--GGGUGUUaGAGGUCUC- -5'
27050 5' -55.8 NC_005832.1 + 20992 0.73 0.442316
Target:  5'- gGCUCUGUCCUCCAgGAUC-CCAGc- -3'
miRNA:   3'- gUGAGGCAGGGGGUgUUAGaGGUCuc -5'
27050 5' -55.8 NC_005832.1 + 35478 0.75 0.36355
Target:  5'- -cCUCCGUCCCUgAgGAUCUCUAGGa -3'
miRNA:   3'- guGAGGCAGGGGgUgUUAGAGGUCUc -5'
27050 5' -55.8 NC_005832.1 + 26363 0.75 0.36355
Target:  5'- ---aCCGUgCCCCCGuCAGUCUCCAGGu -3'
miRNA:   3'- gugaGGCA-GGGGGU-GUUAGAGGUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.