Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27051 | 3' | -59.9 | NC_005832.1 | + | 27701 | 1.07 | 0.001092 |
Target: 5'- cCGUGCACACCGCUCCCAGGAAGGCCUc -3' miRNA: 3'- -GCACGUGUGGCGAGGGUCCUUCCGGA- -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 42517 | 0.71 | 0.348502 |
Target: 5'- --cGCGUGCUGCUCCaugAGGAGGGCCg -3' miRNA: 3'- gcaCGUGUGGCGAGGg--UCCUUCCGGa -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 72838 | 0.71 | 0.364329 |
Target: 5'- cCGUccGCGCcCCuaUCuCCGGGAGGGCCUc -3' miRNA: 3'- -GCA--CGUGuGGcgAG-GGUCCUUCCGGA- -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 8283 | 0.7 | 0.379819 |
Target: 5'- cCGUGCAC-CCgGCUCCCgucaggauaucuaGGGAcuccucgaAGGCCg -3' miRNA: 3'- -GCACGUGuGG-CGAGGG-------------UCCU--------UCCGGa -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 5566 | 0.7 | 0.380647 |
Target: 5'- gGUGCACagGCC-CUCCgAGuGGAGGCCc -3' miRNA: 3'- gCACGUG--UGGcGAGGgUC-CUUCCGGa -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 8001 | 0.7 | 0.388987 |
Target: 5'- --gGCACAggaaCGCUCCCAGGuuGGUCc -3' miRNA: 3'- gcaCGUGUg---GCGAGGGUCCuuCCGGa -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 82788 | 0.7 | 0.388987 |
Target: 5'- -uUGCACACCaCUCCgGGGAGuguaacGGCCa -3' miRNA: 3'- gcACGUGUGGcGAGGgUCCUU------CCGGa -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 36295 | 0.69 | 0.459821 |
Target: 5'- -aUGgACGCCaGCUCUCccucGGAAGGCCUu -3' miRNA: 3'- gcACgUGUGG-CGAGGGu---CCUUCCGGA- -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 54650 | 0.68 | 0.485237 |
Target: 5'- aCGUGCuGCACgGCUCCaaggacgagugggaCAGGGAcGCCUg -3' miRNA: 3'- -GCACG-UGUGgCGAGG--------------GUCCUUcCGGA- -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 39070 | 0.68 | 0.488103 |
Target: 5'- uGUuCAgAuCCGgaUCCCAGGAGGGCCg -3' miRNA: 3'- gCAcGUgU-GGCg-AGGGUCCUUCCGGa -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 6224 | 0.68 | 0.507404 |
Target: 5'- --gGCAgGCCGCgagcUCCuCGGGAGGGCa- -3' miRNA: 3'- gcaCGUgUGGCG----AGG-GUCCUUCCGga -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 104220 | 0.68 | 0.507404 |
Target: 5'- -cUGCcccaguuuacaACGCCGuCUCCCAGGAAGGa-- -3' miRNA: 3'- gcACG-----------UGUGGC-GAGGGUCCUUCCgga -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 37311 | 0.68 | 0.507404 |
Target: 5'- aCGUaGCAC-CUGUUUCCAGuGGAGGUCa -3' miRNA: 3'- -GCA-CGUGuGGCGAGGGUC-CUUCCGGa -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 30732 | 0.68 | 0.517176 |
Target: 5'- gGUGacgGCGCCGCUCCCAaGAagagAGGCa- -3' miRNA: 3'- gCACg--UGUGGCGAGGGUcCU----UCCGga -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 31527 | 0.68 | 0.518157 |
Target: 5'- aGUGCGcCACCGCUCaguguagagaggcggUGGGGAGGaCCUa -3' miRNA: 3'- gCACGU-GUGGCGAGg--------------GUCCUUCC-GGA- -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 96153 | 0.68 | 0.527022 |
Target: 5'- gGUgGCACAUUGC-CaCCAGGguGGCCg -3' miRNA: 3'- gCA-CGUGUGGCGaG-GGUCCuuCCGGa -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 35102 | 0.68 | 0.535943 |
Target: 5'- aCGUGUACGCggcagugUGCUgccacgagugcCCCGGGAuGGCCg -3' miRNA: 3'- -GCACGUGUG-------GCGA-----------GGGUCCUuCCGGa -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 16916 | 0.67 | 0.543917 |
Target: 5'- gGUGCAgGCCGCcccaguccacauggUcaacCCCAGGAAcgcGGCCa -3' miRNA: 3'- gCACGUgUGGCG--------------A----GGGUCCUU---CCGGa -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 1580 | 0.67 | 0.556955 |
Target: 5'- cCGUGCAUgacgGCUGUggCCAuGAGGGCCUg -3' miRNA: 3'- -GCACGUG----UGGCGagGGUcCUUCCGGA- -5' |
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27051 | 3' | -59.9 | NC_005832.1 | + | 52897 | 0.67 | 0.576165 |
Target: 5'- aGUGCACGUCGCUCCuggcccuCAGGAuccuGCCg -3' miRNA: 3'- gCACGUGUGGCGAGG-------GUCCUuc--CGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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