Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27051 | 3' | -59.9 | NC_005832.1 | + | 39070 | 0.68 | 0.488103 |
|
Target: 5'- uGUuCAgAuCCGgaUCCCAGGAGGGCCg -3' miRNA: 3'- gCAcGUgU-GGCg-AGGGUCCUUCCGGa -5' |
|||||||
| 27051 | 3' | -59.9 | NC_005832.1 | + | 54650 | 0.68 | 0.485237 |
|
Target: 5'- aCGUGCuGCACgGCUCCaaggacgagugggaCAGGGAcGCCUg -3' miRNA: 3'- -GCACG-UGUGgCGAGG--------------GUCCUUcCGGA- -5' |
|||||||
| 27051 | 3' | -59.9 | NC_005832.1 | + | 36295 | 0.69 | 0.459821 |
|
Target: 5'- -aUGgACGCCaGCUCUCccucGGAAGGCCUu -3' miRNA: 3'- gcACgUGUGG-CGAGGGu---CCUUCCGGA- -5' |
|||||||
| 27051 | 3' | -59.9 | NC_005832.1 | + | 8001 | 0.7 | 0.388987 |
|
Target: 5'- --gGCACAggaaCGCUCCCAGGuuGGUCc -3' miRNA: 3'- gcaCGUGUg---GCGAGGGUCCuuCCGGa -5' |
|||||||
| 27051 | 3' | -59.9 | NC_005832.1 | + | 82788 | 0.7 | 0.388987 |
|
Target: 5'- -uUGCACACCaCUCCgGGGAGuguaacGGCCa -3' miRNA: 3'- gcACGUGUGGcGAGGgUCCUU------CCGGa -5' |
|||||||
| 27051 | 3' | -59.9 | NC_005832.1 | + | 5566 | 0.7 | 0.380647 |
|
Target: 5'- gGUGCACagGCC-CUCCgAGuGGAGGCCc -3' miRNA: 3'- gCACGUG--UGGcGAGGgUC-CUUCCGGa -5' |
|||||||
| 27051 | 3' | -59.9 | NC_005832.1 | + | 8283 | 0.7 | 0.379819 |
|
Target: 5'- cCGUGCAC-CCgGCUCCCgucaggauaucuaGGGAcuccucgaAGGCCg -3' miRNA: 3'- -GCACGUGuGG-CGAGGG-------------UCCU--------UCCGGa -5' |
|||||||
| 27051 | 3' | -59.9 | NC_005832.1 | + | 72838 | 0.71 | 0.364329 |
|
Target: 5'- cCGUccGCGCcCCuaUCuCCGGGAGGGCCUc -3' miRNA: 3'- -GCA--CGUGuGGcgAG-GGUCCUUCCGGA- -5' |
|||||||
| 27051 | 3' | -59.9 | NC_005832.1 | + | 42517 | 0.71 | 0.348502 |
|
Target: 5'- --cGCGUGCUGCUCCaugAGGAGGGCCg -3' miRNA: 3'- gcaCGUGUGGCGAGGg--UCCUUCCGGa -5' |
|||||||
| 27051 | 3' | -59.9 | NC_005832.1 | + | 27701 | 1.07 | 0.001092 |
|
Target: 5'- cCGUGCACACCGCUCCCAGGAAGGCCUc -3' miRNA: 3'- -GCACGUGUGGCGAGGGUCCUUCCGGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home