miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27052 3' -54.6 NC_005832.1 + 75965 0.66 0.913931
Target:  5'- cGGGg-UGCGCaacGCUcACCUCuUGGCCg -3'
miRNA:   3'- -CCUgaACGCGgc-CGA-UGGAGuACUGG- -5'
27052 3' -54.6 NC_005832.1 + 22989 0.66 0.907144
Target:  5'- uGGACUUGC-CCGcuccgauGUUGCCgcuaaacgcUAUGACCg -3'
miRNA:   3'- -CCUGAACGcGGC-------CGAUGGa--------GUACUGG- -5'
27052 3' -54.6 NC_005832.1 + 67310 0.66 0.901367
Target:  5'- aGGGCUUGUGUCu-CUuccguCCUCAaGACCg -3'
miRNA:   3'- -CCUGAACGCGGccGAu----GGAGUaCUGG- -5'
27052 3' -54.6 NC_005832.1 + 19980 0.66 0.901367
Target:  5'- ----cUGgGCCGGgaGCUUCAcGACCu -3'
miRNA:   3'- ccugaACgCGGCCgaUGGAGUaCUGG- -5'
27052 3' -54.6 NC_005832.1 + 29176 0.66 0.901367
Target:  5'- --cCUUGCGCCaGC-ACCUCAgagGuCCc -3'
miRNA:   3'- ccuGAACGCGGcCGaUGGAGUa--CuGG- -5'
27052 3' -54.6 NC_005832.1 + 29745 0.66 0.901367
Target:  5'- aGGACg-GCuGCCGugUGCCUCAucuUGGCCu -3'
miRNA:   3'- -CCUGaaCG-CGGCcgAUGGAGU---ACUGG- -5'
27052 3' -54.6 NC_005832.1 + 22900 0.66 0.894715
Target:  5'- aGGACcacagagugUGUGCUGGauuuCUGCgaCGUGGCCa -3'
miRNA:   3'- -CCUGa--------ACGCGGCC----GAUGgaGUACUGG- -5'
27052 3' -54.6 NC_005832.1 + 83441 0.66 0.887821
Target:  5'- aGACUUGCugucuccuuuuuGCCGGUgACCUUcucuucacugGUGACUu -3'
miRNA:   3'- cCUGAACG------------CGGCCGaUGGAG----------UACUGG- -5'
27052 3' -54.6 NC_005832.1 + 83732 0.66 0.887821
Target:  5'- gGGACUUGCGCUucacuGGUgAUCUCGUcuucacagggGACUu -3'
miRNA:   3'- -CCUGAACGCGG-----CCGaUGGAGUA----------CUGG- -5'
27052 3' -54.6 NC_005832.1 + 83804 0.67 0.880689
Target:  5'- gGGACUUGCGCUucacuGGUgAUCUCGUcucacaggaGACUu -3'
miRNA:   3'- -CCUGAACGCGG-----CCGaUGGAGUA---------CUGG- -5'
27052 3' -54.6 NC_005832.1 + 87549 0.67 0.873324
Target:  5'- uGGACUcgGCcaucacagaCGGCauggUGCCUCcgGACCa -3'
miRNA:   3'- -CCUGAa-CGcg-------GCCG----AUGGAGuaCUGG- -5'
27052 3' -54.6 NC_005832.1 + 43819 0.67 0.849885
Target:  5'- gGGGCcc-UGCCGGUggugGCCaUCAUGACg -3'
miRNA:   3'- -CCUGaacGCGGCCGa---UGG-AGUACUGg -5'
27052 3' -54.6 NC_005832.1 + 64269 0.68 0.836606
Target:  5'- aGGACgugcccaaagaagGCGCCGGgaACuCUCAcGACa -3'
miRNA:   3'- -CCUGaa-----------CGCGGCCgaUG-GAGUaCUGg -5'
27052 3' -54.6 NC_005832.1 + 27987 0.68 0.824574
Target:  5'- aGGGCcUGC-CCGGCcGCCUCcuuUGcCCu -3'
miRNA:   3'- -CCUGaACGcGGCCGaUGGAGu--ACuGG- -5'
27052 3' -54.6 NC_005832.1 + 102247 0.68 0.824574
Target:  5'- -cGCUucucUGCGCUcuuggcguccauGGCUGCCUCGgcGGCCu -3'
miRNA:   3'- ccUGA----ACGCGG------------CCGAUGGAGUa-CUGG- -5'
27052 3' -54.6 NC_005832.1 + 54733 0.68 0.824574
Target:  5'- aGGACa-GCGUcuCGGCUAuCCUCuUGACg -3'
miRNA:   3'- -CCUGaaCGCG--GCCGAU-GGAGuACUGg -5'
27052 3' -54.6 NC_005832.1 + 90306 0.69 0.788284
Target:  5'- -cGCUcuCGCCuGGCauccucuuggGCCUCAUGACCg -3'
miRNA:   3'- ccUGAacGCGG-CCGa---------UGGAGUACUGG- -5'
27052 3' -54.6 NC_005832.1 + 67433 0.69 0.769213
Target:  5'- uGGGCcgcgGCGgCGGCUcACCUCAagaGGCUg -3'
miRNA:   3'- -CCUGaa--CGCgGCCGA-UGGAGUa--CUGG- -5'
27052 3' -54.6 NC_005832.1 + 80600 0.69 0.759479
Target:  5'- uGGACg-GCGCaugcgaGGcCUGCCUCcUGACUc -3'
miRNA:   3'- -CCUGaaCGCGg-----CC-GAUGGAGuACUGG- -5'
27052 3' -54.6 NC_005832.1 + 67817 0.71 0.636232
Target:  5'- cGGACgacGCGCC-GCUucGCCUCAU-ACCa -3'
miRNA:   3'- -CCUGaa-CGCGGcCGA--UGGAGUAcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.