miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27052 5' -57.5 NC_005832.1 + 75757 0.66 0.78958
Target:  5'- aGGGCCg-UGAGGUccGCUGcGgGCGAGa -3'
miRNA:   3'- cCCUGGagACUCCA--CGAC-CgCGUUCc -5'
27052 5' -57.5 NC_005832.1 + 4991 0.66 0.78958
Target:  5'- aGGGA-CUCUGAcguggacagGGUcCUGG-GCAGGGg -3'
miRNA:   3'- -CCCUgGAGACU---------CCAcGACCgCGUUCC- -5'
27052 5' -57.5 NC_005832.1 + 17761 0.66 0.770871
Target:  5'- uGGGG-CUCUGGGGUuuUGGgGUuuuGGGg -3'
miRNA:   3'- -CCCUgGAGACUCCAcgACCgCGu--UCC- -5'
27052 5' -57.5 NC_005832.1 + 7518 0.66 0.770871
Target:  5'- aGGGACCUggUGGGGUGCUcguuCGUcAGGa -3'
miRNA:   3'- -CCCUGGAg-ACUCCACGAcc--GCGuUCC- -5'
27052 5' -57.5 NC_005832.1 + 73134 0.66 0.765156
Target:  5'- cGGGGCCUUUGGGGccucUGUcuccccuuuucccauUGGgGCcccGAGGa -3'
miRNA:   3'- -CCCUGGAGACUCC----ACG---------------ACCgCG---UUCC- -5'
27052 5' -57.5 NC_005832.1 + 12447 0.66 0.761322
Target:  5'- -aGGCCUUUGAGaaGUGCaaGCGCAAGu -3'
miRNA:   3'- ccCUGGAGACUC--CACGacCGCGUUCc -5'
27052 5' -57.5 NC_005832.1 + 24471 0.66 0.758434
Target:  5'- cGGGACggugGAGGcacgUGCUGGCcacagacgccggagGCAGGGg -3'
miRNA:   3'- -CCCUGgagaCUCC----ACGACCG--------------CGUUCC- -5'
27052 5' -57.5 NC_005832.1 + 46112 0.67 0.716041
Target:  5'- aGGGACUUUgucauuaccaagcAGGUGgguucCUGGUGCAGGGa -3'
miRNA:   3'- -CCCUGGAGac-----------UCCAC-----GACCGCGUUCC- -5'
27052 5' -57.5 NC_005832.1 + 656 0.67 0.70191
Target:  5'- cGGACCccgCcGGGG-GCUGGUGCAGa- -3'
miRNA:   3'- cCCUGGa--GaCUCCaCGACCGCGUUcc -5'
27052 5' -57.5 NC_005832.1 + 10478 0.67 0.69785
Target:  5'- cGGGGCCUacauaucccugcugCUGggguccaGGGUGgUGGC-CGAGGg -3'
miRNA:   3'- -CCCUGGA--------------GAC-------UCCACgACCGcGUUCC- -5'
27052 5' -57.5 NC_005832.1 + 90553 0.69 0.588741
Target:  5'- gGGGugC-CUGAGGgacgGgaGGCcCGAGGa -3'
miRNA:   3'- -CCCugGaGACUCCa---CgaCCGcGUUCC- -5'
27052 5' -57.5 NC_005832.1 + 79657 0.71 0.498416
Target:  5'- aGGGugCUg-GGGGUGCUuacaGGCGUAGGu -3'
miRNA:   3'- -CCCugGAgaCUCCACGA----CCGCGUUCc -5'
27052 5' -57.5 NC_005832.1 + 92445 0.71 0.479141
Target:  5'- cGGACC-CgGAGGUGgUGGaCGaCGAGGa -3'
miRNA:   3'- cCCUGGaGaCUCCACgACC-GC-GUUCC- -5'
27052 5' -57.5 NC_005832.1 + 66377 0.71 0.478187
Target:  5'- cGGGACCUUgaggggaUGGGG-GCUGGCgGCcucccuGGGa -3'
miRNA:   3'- -CCCUGGAG-------ACUCCaCGACCG-CGu-----UCC- -5'
27052 5' -57.5 NC_005832.1 + 5666 0.72 0.450938
Target:  5'- cGGGACCcgucggugguUCUGAGGaGCUGGaagaCGGGGg -3'
miRNA:   3'- -CCCUGG----------AGACUCCaCGACCgc--GUUCC- -5'
27052 5' -57.5 NC_005832.1 + 87731 0.72 0.44174
Target:  5'- uGGGAgUCUCUGGGGUGCUcaugGGCuCcAGGa -3'
miRNA:   3'- -CCCU-GGAGACUCCACGA----CCGcGuUCC- -5'
27052 5' -57.5 NC_005832.1 + 7003 0.72 0.44174
Target:  5'- uGGAcCCUCaGAGGUGCUGGuCGgAcGGa -3'
miRNA:   3'- cCCU-GGAGaCUCCACGACC-GCgUuCC- -5'
27052 5' -57.5 NC_005832.1 + 29308 1.12 0.000836
Target:  5'- gGGGACCUCUGAGGUGCUGGCGCAAGGa -3'
miRNA:   3'- -CCCUGGAGACUCCACGACCGCGUUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.