miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27053 3' -43.6 NC_005832.1 + 103034 0.66 0.99999
Target:  5'- aGAGAgcauAUCCUgAGAGAua-UCUUCUGu -3'
miRNA:   3'- -CUCUau--UAGGA-UCUCUuucAGAAGAU- -5'
27053 3' -43.6 NC_005832.1 + 69013 0.66 0.999979
Target:  5'- uGGAUcccuAUCCcaauggccgGGGGAAAGUCUUCUu -3'
miRNA:   3'- cUCUAu---UAGGa--------UCUCUUUCAGAAGAu -5'
27053 3' -43.6 NC_005832.1 + 75450 0.67 0.999945
Target:  5'- gGAGAgGAUCCUAGAGAcuAGGUUc---- -3'
miRNA:   3'- -CUCUaUUAGGAUCUCU--UUCAGaagau -5'
27053 3' -43.6 NC_005832.1 + 58065 0.68 0.999867
Target:  5'- aGAGu--AUCCUcGAGGAGGauUCUUCUAc -3'
miRNA:   3'- -CUCuauUAGGAuCUCUUUC--AGAAGAU- -5'
27053 3' -43.6 NC_005832.1 + 28597 0.69 0.999701
Target:  5'- ------cUCUUucAGAGAAAGUCUUCUAa -3'
miRNA:   3'- cucuauuAGGA--UCUCUUUCAGAAGAU- -5'
27053 3' -43.6 NC_005832.1 + 73453 0.69 0.999701
Target:  5'- aGAGAUAccucacucuuAUCCUuaaaucuucugAGAGAAAGUCUUg-- -3'
miRNA:   3'- -CUCUAU----------UAGGA-----------UCUCUUUCAGAAgau -5'
27053 3' -43.6 NC_005832.1 + 51367 0.71 0.996745
Target:  5'- ------cUUUUAGAGAAAGUCUUCUGa -3'
miRNA:   3'- cucuauuAGGAUCUCUUUCAGAAGAU- -5'
27053 3' -43.6 NC_005832.1 + 30543 0.74 0.977485
Target:  5'- gGAGAUAAUCUUGuGAGAGAuacUCUUCUGa -3'
miRNA:   3'- -CUCUAUUAGGAU-CUCUUUc--AGAAGAU- -5'
27053 3' -43.6 NC_005832.1 + 98152 0.75 0.96824
Target:  5'- cGGGAUAGUCUUccGGAGAGUCUUCc- -3'
miRNA:   3'- -CUCUAUUAGGAucUCUUUCAGAAGau -5'
27053 3' -43.6 NC_005832.1 + 106280 0.79 0.848798
Target:  5'- cGAGAgucuUCUgAGAGAAAGUCUUCUGa -3'
miRNA:   3'- -CUCUauu-AGGaUCUCUUUCAGAAGAU- -5'
27053 3' -43.6 NC_005832.1 + 30787 0.79 0.848798
Target:  5'- uGAGAUAcUUUgugAGAGAAAGUCUUCUGa -3'
miRNA:   3'- -CUCUAUuAGGa--UCUCUUUCAGAAGAU- -5'
27053 3' -43.6 NC_005832.1 + 30459 0.99 0.116425
Target:  5'- gGAGAaaUAAUCCUAGAGAAAGUCUUCUGa -3'
miRNA:   3'- -CUCU--AUUAGGAUCUCUUUCAGAAGAU- -5'
27053 3' -43.6 NC_005832.1 + 30400 1.09 0.030229
Target:  5'- aGAGAUAAUCCUAGAGAAAGUCUUCUAa -3'
miRNA:   3'- -CUCUAUUAGGAUCUCUUUCAGAAGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.