miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27054 3' -52.8 NC_005832.1 + 8020 0.66 0.945781
Target:  5'- -gUACCCGGCUCAcaUCaaGCUCcUGACg -3'
miRNA:   3'- ugAUGGGUCGAGU--AGaaUGGGuGCUG- -5'
27054 3' -52.8 NC_005832.1 + 91448 0.66 0.941008
Target:  5'- gACUACUCGGC-CGUCaugGCCaagCugGACg -3'
miRNA:   3'- -UGAUGGGUCGaGUAGaa-UGG---GugCUG- -5'
27054 3' -52.8 NC_005832.1 + 5233 0.66 0.941008
Target:  5'- --gGCCCAGCUCAg---GCUCAaGACc -3'
miRNA:   3'- ugaUGGGUCGAGUagaaUGGGUgCUG- -5'
27054 3' -52.8 NC_005832.1 + 100179 0.66 0.93067
Target:  5'- gACUugCCGGacccCggCUUACCUAUGACc -3'
miRNA:   3'- -UGAugGGUCga--GuaGAAUGGGUGCUG- -5'
27054 3' -52.8 NC_005832.1 + 98816 0.66 0.929027
Target:  5'- -aUGCCCGGCUUcagcaaacucucguGUCcaACCCuCGACg -3'
miRNA:   3'- ugAUGGGUCGAG--------------UAGaaUGGGuGCUG- -5'
27054 3' -52.8 NC_005832.1 + 98558 0.66 0.925101
Target:  5'- --aGCCCAGCagCAcUCUUGCCUcccguCGGCa -3'
miRNA:   3'- ugaUGGGUCGa-GU-AGAAUGGGu----GCUG- -5'
27054 3' -52.8 NC_005832.1 + 4956 0.67 0.900173
Target:  5'- cCU-CCCgAGCUCAUCcuggccACCUugGACa -3'
miRNA:   3'- uGAuGGG-UCGAGUAGaa----UGGGugCUG- -5'
27054 3' -52.8 NC_005832.1 + 5504 0.68 0.87112
Target:  5'- cCUGCCagucuGGUUCcuccUCUUGCCCAUGAUg -3'
miRNA:   3'- uGAUGGg----UCGAGu---AGAAUGGGUGCUG- -5'
27054 3' -52.8 NC_005832.1 + 89244 0.68 0.863245
Target:  5'- uGCUGCUCGGCUCccaCggcgUACCCugGcCa -3'
miRNA:   3'- -UGAUGGGUCGAGua-Ga---AUGGGugCuG- -5'
27054 3' -52.8 NC_005832.1 + 102413 0.69 0.838257
Target:  5'- aACUACCCAGguCUCAUCcgagauUCCAgGGCa -3'
miRNA:   3'- -UGAUGGGUC--GAGUAGaau---GGGUgCUG- -5'
27054 3' -52.8 NC_005832.1 + 96807 0.7 0.763128
Target:  5'- aGCUugCCGGcCUCcUCggccaaGCCCugGACa -3'
miRNA:   3'- -UGAugGGUC-GAGuAGaa----UGGGugCUG- -5'
27054 3' -52.8 NC_005832.1 + 72769 0.71 0.73253
Target:  5'- --gGCCCcgcgGGCcCAUCgggACCCGCGACu -3'
miRNA:   3'- ugaUGGG----UCGaGUAGaa-UGGGUGCUG- -5'
27054 3' -52.8 NC_005832.1 + 12712 0.71 0.711629
Target:  5'- gACgGCCCucaAGCUCAUCaagGCCCAUGGg -3'
miRNA:   3'- -UGaUGGG---UCGAGUAGaa-UGGGUGCUg -5'
27054 3' -52.8 NC_005832.1 + 95020 0.71 0.711629
Target:  5'- cGCUGCCCA-CUCGUC---CCaCACGACg -3'
miRNA:   3'- -UGAUGGGUcGAGUAGaauGG-GUGCUG- -5'
27054 3' -52.8 NC_005832.1 + 52772 0.72 0.658242
Target:  5'- cGCUGCCCAcGCUCuUUUUACCCuuGCGuCc -3'
miRNA:   3'- -UGAUGGGU-CGAGuAGAAUGGG--UGCuG- -5'
27054 3' -52.8 NC_005832.1 + 33445 0.74 0.540313
Target:  5'- uACaGCCCcaacgaacuggAGCcUAUCUUGCCCGCGGCg -3'
miRNA:   3'- -UGaUGGG-----------UCGaGUAGAAUGGGUGCUG- -5'
27054 3' -52.8 NC_005832.1 + 31839 1.1 0.00284
Target:  5'- cACUACCCAGCUCAUCUUACCCACGACg -3'
miRNA:   3'- -UGAUGGGUCGAGUAGAAUGGGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.