miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27054 5' -54.3 NC_005832.1 + 78532 0.66 0.906077
Target:  5'- aGGCCGUccuuuacccuGGUGAcguccacagagUCUGGGUcgacgUGAACGa -3'
miRNA:   3'- gCCGGCA----------CCACU-----------AGACCCG-----AUUUGUc -5'
27054 5' -54.3 NC_005832.1 + 32926 0.66 0.895495
Target:  5'- aGGCgGUGGUGcagucguggugccugGUCUcGGGcCUGAAgGGa -3'
miRNA:   3'- gCCGgCACCAC---------------UAGA-CCC-GAUUUgUC- -5'
27054 5' -54.3 NC_005832.1 + 7695 0.67 0.878439
Target:  5'- uGGCCGUGcugGGUCUGacGGCc-AGCAGg -3'
miRNA:   3'- gCCGGCACca-CUAGAC--CCGauUUGUC- -5'
27054 5' -54.3 NC_005832.1 + 66832 0.67 0.855217
Target:  5'- gGGCUGUGGUGAccuacggggacUCUacgaGGGCcGGAuCAGg -3'
miRNA:   3'- gCCGGCACCACU-----------AGA----CCCGaUUU-GUC- -5'
27054 5' -54.3 NC_005832.1 + 67037 0.67 0.855217
Target:  5'- gCGGCCGUGGcGAgggCcgcGGGCgUAAAgAGg -3'
miRNA:   3'- -GCCGGCACCaCUa--Ga--CCCG-AUUUgUC- -5'
27054 5' -54.3 NC_005832.1 + 50851 0.67 0.855217
Target:  5'- gGGCCGUuGUGAUCUaGGa-GGACGGg -3'
miRNA:   3'- gCCGGCAcCACUAGAcCCgaUUUGUC- -5'
27054 5' -54.3 NC_005832.1 + 66814 0.68 0.830042
Target:  5'- cCGGCCGcGGc---CUGGGCUuccAGCAGa -3'
miRNA:   3'- -GCCGGCaCCacuaGACCCGAu--UUGUC- -5'
27054 5' -54.3 NC_005832.1 + 56892 0.69 0.784332
Target:  5'- aGGCCGcGGUG-UCUGGcCUAAACc- -3'
miRNA:   3'- gCCGGCaCCACuAGACCcGAUUUGuc -5'
27054 5' -54.3 NC_005832.1 + 42309 0.69 0.774709
Target:  5'- aGGCCGUGGccauGUgUGGGCUGGGg-- -3'
miRNA:   3'- gCCGGCACCac--UAgACCCGAUUUguc -5'
27054 5' -54.3 NC_005832.1 + 10008 0.69 0.774709
Target:  5'- aGGCCGUGGcucacgUGaGGCUGGACGGc -3'
miRNA:   3'- gCCGGCACCacuag-AC-CCGAUUUGUC- -5'
27054 5' -54.3 NC_005832.1 + 32254 0.69 0.774709
Target:  5'- -uGCCGUGGUGAgggGGGCgAGGCuGa -3'
miRNA:   3'- gcCGGCACCACUagaCCCGaUUUGuC- -5'
27054 5' -54.3 NC_005832.1 + 39441 0.71 0.651466
Target:  5'- gGGuCCGUGG-GAgcggCUGGGCcucagGGGCAGa -3'
miRNA:   3'- gCC-GGCACCaCUa---GACCCGa----UUUGUC- -5'
27054 5' -54.3 NC_005832.1 + 32730 0.73 0.535717
Target:  5'- gCGGUCGUGGUGcuugGUCUcGGGcCUGAAgGGa -3'
miRNA:   3'- -GCCGGCACCAC----UAGA-CCC-GAUUUgUC- -5'
27054 5' -54.3 NC_005832.1 + 32823 0.74 0.505204
Target:  5'- aCGGUCGUGGUGccugGUCUcGGGcCUGAAgGGa -3'
miRNA:   3'- -GCCGGCACCAC----UAGA-CCC-GAUUUgUC- -5'
27054 5' -54.3 NC_005832.1 + 36062 0.74 0.485283
Target:  5'- gGGCCG-GGUGGacgcucCUGGGCUGGACc- -3'
miRNA:   3'- gCCGGCaCCACUa-----GACCCGAUUUGuc -5'
27054 5' -54.3 NC_005832.1 + 52696 0.77 0.326318
Target:  5'- gGGCCGUGGUGGUggacUUGGGCaUGGcCAGg -3'
miRNA:   3'- gCCGGCACCACUA----GACCCG-AUUuGUC- -5'
27054 5' -54.3 NC_005832.1 + 67470 0.79 0.256178
Target:  5'- gCGGCgGUGGcgGGUCUGGGggGAGCGGu -3'
miRNA:   3'- -GCCGgCACCa-CUAGACCCgaUUUGUC- -5'
27054 5' -54.3 NC_005832.1 + 31805 1.09 0.002674
Target:  5'- aCGGCCGUGGUGAUCUGGGCUAAACAGu -3'
miRNA:   3'- -GCCGGCACCACUAGACCCGAUUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.