miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27055 3' -54 NC_005832.1 + 97150 0.66 0.930297
Target:  5'- cGCCaccacguAGGACUGGgaagccaugUCCCUGAGCUUg -3'
miRNA:   3'- -CGGgauc---UCUUGACC---------AGGGACUUGGG- -5'
27055 3' -54 NC_005832.1 + 48089 0.66 0.924837
Target:  5'- aCCCgcaAGuGGGaaGGUCCCUGAGgCUg -3'
miRNA:   3'- cGGGa--UCuCUUgaCCAGGGACUUgGG- -5'
27055 3' -54 NC_005832.1 + 80709 0.66 0.924837
Target:  5'- gGCCCUGGAGg---GGUUCacgGAAgCCg -3'
miRNA:   3'- -CGGGAUCUCuugaCCAGGga-CUUgGG- -5'
27055 3' -54 NC_005832.1 + 4862 0.66 0.924277
Target:  5'- gGCCC-AGAGGccgcucgugagGCUGGuagacgcucacgaUCCCUGcGCCa -3'
miRNA:   3'- -CGGGaUCUCU-----------UGACC-------------AGGGACuUGGg -5'
27055 3' -54 NC_005832.1 + 27056 0.66 0.919122
Target:  5'- cGCUUUgcAGAGGcaaACUaGGUCCgccgaUGAGCCCa -3'
miRNA:   3'- -CGGGA--UCUCU---UGA-CCAGGg----ACUUGGG- -5'
27055 3' -54 NC_005832.1 + 45661 0.66 0.919122
Target:  5'- aGCCuCUcGGAcaggccCUGGcCCCUGAACCUc -3'
miRNA:   3'- -CGG-GA-UCUcuu---GACCaGGGACUUGGG- -5'
27055 3' -54 NC_005832.1 + 93658 0.66 0.919122
Target:  5'- cGCCgUAGAGAACcauccgucGUCCCUGGGgaCg -3'
miRNA:   3'- -CGGgAUCUCUUGac------CAGGGACUUggG- -5'
27055 3' -54 NC_005832.1 + 73095 0.66 0.913153
Target:  5'- gGCCCc-GAGGACccuggGGUCCgucgGGACCUa -3'
miRNA:   3'- -CGGGauCUCUUGa----CCAGGga--CUUGGG- -5'
27055 3' -54 NC_005832.1 + 20505 0.66 0.912542
Target:  5'- aCCCUcugGGAGGAC-GGUgCCCuUGAugcuguaACCCg -3'
miRNA:   3'- cGGGA---UCUCUUGaCCA-GGG-ACU-------UGGG- -5'
27055 3' -54 NC_005832.1 + 87626 0.66 0.906932
Target:  5'- -gCCUGGAGGACgcugCCCUGGuCCUc -3'
miRNA:   3'- cgGGAUCUCUUGaccaGGGACUuGGG- -5'
27055 3' -54 NC_005832.1 + 75457 0.66 0.906932
Target:  5'- aUCCUAGAG-ACUaGGUUcaggaCCgggGAGCCCu -3'
miRNA:   3'- cGGGAUCUCuUGA-CCAG-----GGa--CUUGGG- -5'
27055 3' -54 NC_005832.1 + 636 0.66 0.906932
Target:  5'- cGCCgaacaUGGAcacaAACUGGUCCacCUGGGCCUg -3'
miRNA:   3'- -CGGg----AUCUc---UUGACCAGG--GACUUGGG- -5'
27055 3' -54 NC_005832.1 + 80855 0.67 0.90046
Target:  5'- gGCCCUGGAcgGGAUgacGGUCUUU-AACCCc -3'
miRNA:   3'- -CGGGAUCU--CUUGa--CCAGGGAcUUGGG- -5'
27055 3' -54 NC_005832.1 + 97158 0.67 0.89374
Target:  5'- cGCCgUGGcaaAGAGcCUGGacUCCCUGGACg- -3'
miRNA:   3'- -CGGgAUC---UCUU-GACC--AGGGACUUGgg -5'
27055 3' -54 NC_005832.1 + 53055 0.67 0.89374
Target:  5'- cGgCCUAGAGA--UGGUCgCCggcaGGAUCCu -3'
miRNA:   3'- -CgGGAUCUCUugACCAG-GGa---CUUGGG- -5'
27055 3' -54 NC_005832.1 + 66143 0.67 0.89374
Target:  5'- uGCCgCggcGGGAAUggaGGcuUCCCUGAACCUc -3'
miRNA:   3'- -CGG-Gau-CUCUUGa--CC--AGGGACUUGGG- -5'
27055 3' -54 NC_005832.1 + 80265 0.67 0.886776
Target:  5'- uCCCUcagguGGAGuauuACcgugGGUCuCCUGGACCUg -3'
miRNA:   3'- cGGGA-----UCUCu---UGa---CCAG-GGACUUGGG- -5'
27055 3' -54 NC_005832.1 + 41289 0.67 0.886776
Target:  5'- cGCCUccaagAGGGGcCUGGUgaaCCCUGAacaggcuuaaaACCCu -3'
miRNA:   3'- -CGGGa----UCUCUuGACCA---GGGACU-----------UGGG- -5'
27055 3' -54 NC_005832.1 + 78880 0.67 0.886776
Target:  5'- gGCC--AGGGuGGCaGaGUCCCUGAGCCUg -3'
miRNA:   3'- -CGGgaUCUC-UUGaC-CAGGGACUUGGG- -5'
27055 3' -54 NC_005832.1 + 67760 0.67 0.879573
Target:  5'- gGUCCaAGGGAGC---UCCCUG-ACCCa -3'
miRNA:   3'- -CGGGaUCUCUUGaccAGGGACuUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.