miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27057 5' -57.7 NC_005832.1 + 1603 0.67 0.703062
Target:  5'- cAGGCUCUacaggaUGGGggacagagaguucCACcugaggUGCGACGCCCCg -3'
miRNA:   3'- -UCCGGGAg-----AUCC-------------GUG------AUGUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 16462 0.67 0.693856
Target:  5'- gAGGCgacaaCUCUGGGUACacCAcCGCCCa -3'
miRNA:   3'- -UCCGg----GAGAUCCGUGauGUuGCGGGg -5'
27057 5' -57.7 NC_005832.1 + 71049 0.67 0.69283
Target:  5'- --uCCCUgaaccugacuuucCUGGGCuCUGCGAUGUCCCg -3'
miRNA:   3'- uccGGGA-------------GAUCCGuGAUGUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 67085 0.67 0.683576
Target:  5'- gAGGCCCUggAGGcCACUccguACGAgGCCa- -3'
miRNA:   3'- -UCCGGGAgaUCC-GUGA----UGUUgCGGgg -5'
27057 5' -57.7 NC_005832.1 + 5699 0.67 0.673252
Target:  5'- aGGGCCuccaCUCggaGGGcCugUGCAcCGUCCCg -3'
miRNA:   3'- -UCCGG----GAGa--UCC-GugAUGUuGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 72789 0.67 0.673252
Target:  5'- cGGGaCCCUUUGGGCcgu-CGG-GCCCCg -3'
miRNA:   3'- -UCC-GGGAGAUCCGugauGUUgCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 97078 0.67 0.673252
Target:  5'- aAGGCCCaggAGGCcCUGucgaccucaGACGCCCUg -3'
miRNA:   3'- -UCCGGGagaUCCGuGAUg--------UUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 95799 0.67 0.670148
Target:  5'- aGGGCCCUCgagAGGgAgUGCGccgacuacggaggaGCGUCUCc -3'
miRNA:   3'- -UCCGGGAGa--UCCgUgAUGU--------------UGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 88219 0.67 0.662894
Target:  5'- cAGGCCgCUUUGGGUucgaACUAUgugaggAGCGCCUg -3'
miRNA:   3'- -UCCGG-GAGAUCCG----UGAUG------UUGCGGGg -5'
27057 5' -57.7 NC_005832.1 + 499 0.67 0.658743
Target:  5'- gGGGcCCCUgUGGGCcgaguaccacuuuCUGCAccaGCCCCc -3'
miRNA:   3'- -UCC-GGGAgAUCCGu------------GAUGUug-CGGGG- -5'
27057 5' -57.7 NC_005832.1 + 48330 0.68 0.65251
Target:  5'- uGGGUcaCCUUcGGGUGCUGguuCGACGCCCg -3'
miRNA:   3'- -UCCG--GGAGaUCCGUGAU---GUUGCGGGg -5'
27057 5' -57.7 NC_005832.1 + 20173 0.68 0.65147
Target:  5'- uGGCCCUCaugauggUGGcGCACaGCAucGCGUCCg -3'
miRNA:   3'- uCCGGGAG-------AUC-CGUGaUGU--UGCGGGg -5'
27057 5' -57.7 NC_005832.1 + 52749 0.68 0.642109
Target:  5'- gAGGCCagacAGGUACUGCGucACGCugCCCa -3'
miRNA:   3'- -UCCGGgagaUCCGUGAUGU--UGCG--GGG- -5'
27057 5' -57.7 NC_005832.1 + 32691 0.68 0.631699
Target:  5'- cAGGCCCgagaCcAGGCACcACGAccguaccacCGCCUCg -3'
miRNA:   3'- -UCCGGGa---GaUCCGUGaUGUU---------GCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 32784 0.68 0.631699
Target:  5'- cAGGCCCgagaCcAGGCACcACGAcugcaccacCGCCUCg -3'
miRNA:   3'- -UCCGGGa---GaUCCGUGaUGUU---------GCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 44137 0.68 0.631699
Target:  5'- gAGGUCCcgcGGGaCugUGCGACGCUCUg -3'
miRNA:   3'- -UCCGGGagaUCC-GugAUGUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 97249 0.68 0.631699
Target:  5'- -uGCCCUCaGGGcCACcGCGGCGgCCUg -3'
miRNA:   3'- ucCGGGAGaUCC-GUGaUGUUGCgGGG- -5'
27057 5' -57.7 NC_005832.1 + 94819 0.68 0.621291
Target:  5'- gAGGaCCCugUCUAGGCuaaaguCUGCGGC-CUCCa -3'
miRNA:   3'- -UCC-GGG--AGAUCCGu-----GAUGUUGcGGGG- -5'
27057 5' -57.7 NC_005832.1 + 47747 0.68 0.621291
Target:  5'- aGGGaCCUCUcguugGGGUACUGCuGCacgacguaGCCCCu -3'
miRNA:   3'- -UCCgGGAGA-----UCCGUGAUGuUG--------CGGGG- -5'
27057 5' -57.7 NC_005832.1 + 87369 0.68 0.61089
Target:  5'- uGGCCCUC-AGGCuCUccagggugaGgGugGCCCUg -3'
miRNA:   3'- uCCGGGAGaUCCGuGA---------UgUugCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.