miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27058 3' -52.6 NC_005832.1 + 56638 0.66 0.953624
Target:  5'- gACAUugUGucccagaucaAGCAGaGgggagAUGCCAAgGCCu -3'
miRNA:   3'- -UGUAugAC----------UCGUC-Ca----UGCGGUUgCGG- -5'
27058 3' -52.6 NC_005832.1 + 56692 0.67 0.923953
Target:  5'- aACAUcCUcAGUucGUGCGCCAuggACGCCa -3'
miRNA:   3'- -UGUAuGAcUCGucCAUGCGGU---UGCGG- -5'
27058 3' -52.6 NC_005832.1 + 56750 0.7 0.809117
Target:  5'- gGCGUACUGcGcCAGGUuuAgGCCAgacaccgcggccuGCGCCu -3'
miRNA:   3'- -UGUAUGACuC-GUCCA--UgCGGU-------------UGCGG- -5'
27058 3' -52.6 NC_005832.1 + 62202 0.74 0.550262
Target:  5'- gACAgagGCUGuAGuCAGGUACGggcaccucaCCAACGCCc -3'
miRNA:   3'- -UGUa--UGAC-UC-GUCCAUGC---------GGUUGCGG- -5'
27058 3' -52.6 NC_005832.1 + 68585 0.66 0.949329
Target:  5'- cCGUGCggugacgGAuGCAGuGUGCGCCGcGgGCCu -3'
miRNA:   3'- uGUAUGa------CU-CGUC-CAUGCGGU-UgCGG- -5'
27058 3' -52.6 NC_005832.1 + 79703 0.72 0.688274
Target:  5'- -gGUACUuggccuuguugggGAGCAGGUugGCCcuGAgGCCc -3'
miRNA:   3'- ugUAUGA-------------CUCGUCCAugCGG--UUgCGG- -5'
27058 3' -52.6 NC_005832.1 + 90663 0.73 0.614219
Target:  5'- aACGUGCUGAGgGaGUGCGCCGA-GCUc -3'
miRNA:   3'- -UGUAUGACUCgUcCAUGCGGUUgCGG- -5'
27058 3' -52.6 NC_005832.1 + 96872 0.66 0.953624
Target:  5'- cCAgGCUGGGCAGGUccauCGgCGAgguucucccCGCCa -3'
miRNA:   3'- uGUaUGACUCGUCCAu---GCgGUU---------GCGG- -5'
27058 3' -52.6 NC_005832.1 + 97140 0.66 0.944777
Target:  5'- gGCAaagGCUGcGGCAG--ACGCCGugGCa -3'
miRNA:   3'- -UGUa--UGAC-UCGUCcaUGCGGUugCGg -5'
27058 3' -52.6 NC_005832.1 + 97170 0.69 0.853787
Target:  5'- uCGUACUGGGaggcCAGGUcCGCCAccACGUa -3'
miRNA:   3'- uGUAUGACUC----GUCCAuGCGGU--UGCGg -5'
27058 3' -52.6 NC_005832.1 + 98468 0.66 0.949329
Target:  5'- ---cGCUGguauAGCAGaGUgcuGCGCCAaccACGCCc -3'
miRNA:   3'- uguaUGAC----UCGUC-CA---UGCGGU---UGCGG- -5'
27058 3' -52.6 NC_005832.1 + 99570 0.66 0.955271
Target:  5'- gGCGUACUuccAGUAGG-ACcuggccccaaacggaGCCAugGCCg -3'
miRNA:   3'- -UGUAUGAc--UCGUCCaUG---------------CGGUugCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.