Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27058 | 3' | -52.6 | NC_005832.1 | + | 56638 | 0.66 | 0.953624 |
Target: 5'- gACAUugUGucccagaucaAGCAGaGgggagAUGCCAAgGCCu -3' miRNA: 3'- -UGUAugAC----------UCGUC-Ca----UGCGGUUgCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 1340 | 0.68 | 0.869788 |
Target: 5'- uGCAgACUGcaccGCggAGGU-CGCCAugGCCu -3' miRNA: 3'- -UGUaUGACu---CG--UCCAuGCGGUugCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 52041 | 0.69 | 0.861902 |
Target: 5'- gGCAUGCUuAGguGGaaagACGCCcugGACGCg -3' miRNA: 3'- -UGUAUGAcUCguCCa---UGCGG---UUGCGg -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 36683 | 1.11 | 0.00273 |
Target: 5'- gACAUACUGAGCAGGUACGCCAACGCCc -3' miRNA: 3'- -UGUAUGACUCGUCCAUGCGGUUGCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 36231 | 0.79 | 0.326902 |
Target: 5'- gGCAUGCUG-GCcg--ACGCCAGCGCCa -3' miRNA: 3'- -UGUAUGACuCGuccaUGCGGUUGCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 62202 | 0.74 | 0.550262 |
Target: 5'- gACAgagGCUGuAGuCAGGUACGggcaccucaCCAACGCCc -3' miRNA: 3'- -UGUa--UGAC-UC-GUCCAUGC---------GGUUGCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 1238 | 0.74 | 0.56081 |
Target: 5'- cGCcgGCUGGGCcaccAGGcccgACGCCGuguGCGCCa -3' miRNA: 3'- -UGuaUGACUCG----UCCa---UGCGGU---UGCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 90663 | 0.73 | 0.614219 |
Target: 5'- aACGUGCUGAGgGaGUGCGCCGA-GCUc -3' miRNA: 3'- -UGUAUGACUCgUcCAUGCGGUUgCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 79703 | 0.72 | 0.688274 |
Target: 5'- -gGUACUuggccuuguugggGAGCAGGUugGCCcuGAgGCCc -3' miRNA: 3'- ugUAUGA-------------CUCGUCCAugCGG--UUgCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 15524 | 0.69 | 0.845449 |
Target: 5'- cCAU-CUGAGUcacaaAGGUGC-UCGACGCCa -3' miRNA: 3'- uGUAuGACUCG-----UCCAUGcGGUUGCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 97170 | 0.69 | 0.853787 |
Target: 5'- uCGUACUGGGaggcCAGGUcCGCCAccACGUa -3' miRNA: 3'- uGUAUGACUC----GUCCAuGCGGU--UGCGg -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 55061 | 0.66 | 0.953624 |
Target: 5'- gGCGUGCuuUGGGgAGGUcUGCUuGCGUCg -3' miRNA: 3'- -UGUAUG--ACUCgUCCAuGCGGuUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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