miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27058 3' -52.6 NC_005832.1 + 36683 1.11 0.00273
Target:  5'- gACAUACUGAGCAGGUACGCCAACGCCc -3'
miRNA:   3'- -UGUAUGACUCGUCCAUGCGGUUGCGG- -5'
27058 3' -52.6 NC_005832.1 + 36231 0.79 0.326902
Target:  5'- gGCAUGCUG-GCcg--ACGCCAGCGCCa -3'
miRNA:   3'- -UGUAUGACuCGuccaUGCGGUUGCGG- -5'
27058 3' -52.6 NC_005832.1 + 1549 0.77 0.430179
Target:  5'- ----cCUGAGCcuGGaGUGCGCCAugGCCa -3'
miRNA:   3'- uguauGACUCG--UC-CAUGCGGUugCGG- -5'
27058 3' -52.6 NC_005832.1 + 62202 0.74 0.550262
Target:  5'- gACAgagGCUGuAGuCAGGUACGggcaccucaCCAACGCCc -3'
miRNA:   3'- -UGUa--UGAC-UC-GUCCAUGC---------GGUUGCGG- -5'
27058 3' -52.6 NC_005832.1 + 1238 0.74 0.56081
Target:  5'- cGCcgGCUGGGCcaccAGGcccgACGCCGuguGCGCCa -3'
miRNA:   3'- -UGuaUGACUCG----UCCa---UGCGGU---UGCGG- -5'
27058 3' -52.6 NC_005832.1 + 90663 0.73 0.614219
Target:  5'- aACGUGCUGAGgGaGUGCGCCGA-GCUc -3'
miRNA:   3'- -UGUAUGACUCgUcCAUGCGGUUgCGG- -5'
27058 3' -52.6 NC_005832.1 + 79703 0.72 0.688274
Target:  5'- -gGUACUuggccuuguugggGAGCAGGUugGCCcuGAgGCCc -3'
miRNA:   3'- ugUAUGA-------------CUCGUCCAugCGG--UUgCGG- -5'
27058 3' -52.6 NC_005832.1 + 36510 0.72 0.699938
Target:  5'- gGCGgccACgGAgGCGGcGUACGCCAGgGCCg -3'
miRNA:   3'- -UGUa--UGaCU-CGUC-CAUGCGGUUgCGG- -5'
27058 3' -52.6 NC_005832.1 + 10806 0.7 0.791229
Target:  5'- cCAgcCUGAGguGGgucAUGCCggUGCCu -3'
miRNA:   3'- uGUauGACUCguCCa--UGCGGuuGCGG- -5'
27058 3' -52.6 NC_005832.1 + 56750 0.7 0.809117
Target:  5'- gGCGUACUGcGcCAGGUuuAgGCCAgacaccgcggccuGCGCCu -3'
miRNA:   3'- -UGUAUGACuC-GUCCA--UgCGGU-------------UGCGG- -5'
27058 3' -52.6 NC_005832.1 + 47488 0.69 0.82814
Target:  5'- -gAUAggGAGCAGGUccACuGCCAcgACGCCc -3'
miRNA:   3'- ugUAUgaCUCGUCCA--UG-CGGU--UGCGG- -5'
27058 3' -52.6 NC_005832.1 + 44541 0.69 0.82814
Target:  5'- uGCAaGCUGGGCAagaccuacgACGCCAcCGCCu -3'
miRNA:   3'- -UGUaUGACUCGUcca------UGCGGUuGCGG- -5'
27058 3' -52.6 NC_005832.1 + 15524 0.69 0.845449
Target:  5'- cCAU-CUGAGUcacaaAGGUGC-UCGACGCCa -3'
miRNA:   3'- uGUAuGACUCG-----UCCAUGcGGUUGCGG- -5'
27058 3' -52.6 NC_005832.1 + 97170 0.69 0.853787
Target:  5'- uCGUACUGGGaggcCAGGUcCGCCAccACGUa -3'
miRNA:   3'- uGUAUGACUC----GUCCAuGCGGU--UGCGg -5'
27058 3' -52.6 NC_005832.1 + 52041 0.69 0.861902
Target:  5'- gGCAUGCUuAGguGGaaagACGCCcugGACGCg -3'
miRNA:   3'- -UGUAUGAcUCguCCa---UGCGG---UUGCGg -5'
27058 3' -52.6 NC_005832.1 + 1340 0.68 0.869788
Target:  5'- uGCAgACUGcaccGCggAGGU-CGCCAugGCCu -3'
miRNA:   3'- -UGUaUGACu---CG--UCCAuGCGGUugCGG- -5'
27058 3' -52.6 NC_005832.1 + 8176 0.68 0.892005
Target:  5'- gGCGgaaACUGAGCAc-UGCGCCGGaGCCg -3'
miRNA:   3'- -UGUa--UGACUCGUccAUGCGGUUgCGG- -5'
27058 3' -52.6 NC_005832.1 + 31055 0.68 0.901605
Target:  5'- -gGUGgUGGGgugguucugccauguCAGGUGCGUCAAgGCCu -3'
miRNA:   3'- ugUAUgACUC---------------GUCCAUGCGGUUgCGG- -5'
27058 3' -52.6 NC_005832.1 + 56692 0.67 0.923953
Target:  5'- aACAUcCUcAGUucGUGCGCCAuggACGCCa -3'
miRNA:   3'- -UGUAuGAcUCGucCAUGCGGU---UGCGG- -5'
27058 3' -52.6 NC_005832.1 + 1042 0.67 0.929006
Target:  5'- cACAUACUcGGCcGGccccugcUACGCCGggggcugcaGCGCCu -3'
miRNA:   3'- -UGUAUGAcUCGuCC-------AUGCGGU---------UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.