Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2706 | 5' | -56.7 | NC_001491.2 | + | 1288 | 0.67 | 0.855185 |
Target: 5'- cUGGCU-GCGGGGGgagaugGGGgccaGGCUCUCUc -3' miRNA: 3'- aGCCGAaCGCCUCCa-----UUC----UCGAGGGG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 19281 | 0.74 | 0.462503 |
Target: 5'- cUGGC-UGCGGAGGgcAGAGUuuagauaugaguUCUCCa -3' miRNA: 3'- aGCCGaACGCCUCCauUCUCG------------AGGGG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 48936 | 0.66 | 0.862833 |
Target: 5'- cCGGCUgccaGCcuccGGUAAGGGCacaUCCCCc -3' miRNA: 3'- aGCCGAa---CGccu-CCAUUCUCG---AGGGG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 52939 | 0.68 | 0.787394 |
Target: 5'- cUGGCUggccaUGCgaaaGGcGGUGAGGGCgcgaaUCCCCa -3' miRNA: 3'- aGCCGA-----ACG----CCuCCAUUCUCG-----AGGGG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 61404 | 0.68 | 0.796439 |
Target: 5'- aUCuGCg-GCGGcuAGGau-GAGCUCCCCg -3' miRNA: 3'- -AGcCGaaCGCC--UCCauuCUCGAGGGG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 79089 | 0.66 | 0.884519 |
Target: 5'- aCGGUUUGgGGuGGGUAGGugcgagggucuGGCUgUCCg -3' miRNA: 3'- aGCCGAACgCC-UCCAUUC-----------UCGAgGGG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 81109 | 0.67 | 0.831067 |
Target: 5'- gCGGCUgcguagGCGGcGGUGA-AGCccacCCCCa -3' miRNA: 3'- aGCCGAa-----CGCCuCCAUUcUCGa---GGGG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 108078 | 0.68 | 0.768897 |
Target: 5'- cCGGCgugUGUcgucuccccGGcgccAGGUGagacaGGAGCUCCCCc -3' miRNA: 3'- aGCCGa--ACG---------CC----UCCAU-----UCUCGAGGGG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 114302 | 0.71 | 0.619758 |
Target: 5'- cCGGCgUGUGGAgcuGGUGguuGAGCaCCCCg -3' miRNA: 3'- aGCCGaACGCCU---CCAUu--CUCGaGGGG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 116156 | 0.67 | 0.823508 |
Target: 5'- gCGGCc-GCGGAGG--GGAGCcuucagacccugccgCCCCu -3' miRNA: 3'- aGCCGaaCGCCUCCauUCUCGa--------------GGGG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 118126 | 0.68 | 0.805338 |
Target: 5'- cUCGGCcuccccggGCGGAGGguccccGGCaCCCCg -3' miRNA: 3'- -AGCCGaa------CGCCUCCauuc--UCGaGGGG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 119148 | 1.13 | 0.001364 |
Target: 5'- uUCGGCUUGCGGAGGUAAGAGCUCCCCg -3' miRNA: 3'- -AGCCGAACGCCUCCAUUCUCGAGGGG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 122274 | 0.68 | 0.759463 |
Target: 5'- cCGGCgaGCGcuuuuGGUGGGAcGCUCaCCCu -3' miRNA: 3'- aGCCGaaCGCcu---CCAUUCU-CGAG-GGG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 123492 | 0.68 | 0.77821 |
Target: 5'- gCGGCUgcgugGCGGGGGaacagcucGGGCUCggcgCCCg -3' miRNA: 3'- aGCCGAa----CGCCUCCauu-----CUCGAG----GGG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 124522 | 0.67 | 0.831067 |
Target: 5'- cCaGCUucaUGCGGcuGGaucuccAGAGCUCCCCu -3' miRNA: 3'- aGcCGA---ACGCCu-CCau----UCUCGAGGGG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 125583 | 0.69 | 0.730527 |
Target: 5'- gCGGCggccGuCGGAGGgggGGGAuGCgcgCCCCg -3' miRNA: 3'- aGCCGaa--C-GCCUCCa--UUCU-CGa--GGGG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 130949 | 0.66 | 0.877505 |
Target: 5'- cCGGUaccccaUUGCGcaucagccGAGuGUGAGuAGUUCCCCg -3' miRNA: 3'- aGCCG------AACGC--------CUC-CAUUC-UCGAGGGG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 136326 | 0.67 | 0.82266 |
Target: 5'- gCGGCUcagccuuugGgGGAGGU-AGAGUUUCCa -3' miRNA: 3'- aGCCGAa--------CgCCUCCAuUCUCGAGGGg -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 144880 | 0.72 | 0.539203 |
Target: 5'- cCGGCUggGCGGcagccgccgGGGUAGGAGgaCCgCCg -3' miRNA: 3'- aGCCGAa-CGCC---------UCCAUUCUCgaGG-GG- -5' |
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2706 | 5' | -56.7 | NC_001491.2 | + | 145594 | 0.7 | 0.700832 |
Target: 5'- uUCGGacgcuggucCUUGgGGAgccGGUGAGGGCUCcggCCCg -3' miRNA: 3'- -AGCC---------GAACgCCU---CCAUUCUCGAG---GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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