Results 1 - 20 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 1260 | 0.67 | 0.487425 |
Target: 5'- cCGCcgaccugUCCuCGCGGgACgCCGGCUGGGCCa- -3' miRNA: 3'- -GCG-------AGG-GUGCC-UG-GGCUGGCCUGGcu -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 7458 | 0.66 | 0.593543 |
Target: 5'- gGCUCCUAUGGACUgGGCgcacaGGACa-- -3' miRNA: 3'- gCGAGGGUGCCUGGgCUGg----CCUGgcu -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 20002 | 0.66 | 0.583735 |
Target: 5'- uCGCUCCCACcagGGAcaacaCCCaGGCggCGGACgCGAu -3' miRNA: 3'- -GCGAGGGUG---CCU-----GGG-CUG--GCCUG-GCU- -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 29395 | 0.72 | 0.28292 |
Target: 5'- aCGCUCCCAagaGGuuguuugACCCcaGGCCGGgcGCCGAa -3' miRNA: 3'- -GCGAGGGUg--CC-------UGGG--CUGGCC--UGGCU- -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 30115 | 0.66 | 0.573959 |
Target: 5'- aGCUCCCugGGGuucCUCGACgCGGGa-GAu -3' miRNA: 3'- gCGAGGGugCCU---GGGCUG-GCCUggCU- -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 36073 | 0.67 | 0.525768 |
Target: 5'- aCGCUCCUggGCuGGACCaCGACCGccCUGGc -3' miRNA: 3'- -GCGAGGG--UG-CCUGG-GCUGGCcuGGCU- -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 39488 | 0.68 | 0.452221 |
Target: 5'- uGCUCCCcUGGGCCC--CUGGGCCc- -3' miRNA: 3'- gCGAGGGuGCCUGGGcuGGCCUGGcu -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 39561 | 1.08 | 0.000753 |
Target: 5'- cCGCUCCCACGGACCCGACCGGACCGAu -3' miRNA: 3'- -GCGAGGGUGCCUGGGCUGGCCUGGCU- -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 39668 | 0.7 | 0.376689 |
Target: 5'- uGgUCCCGCGGGUCCucCCGGACCc- -3' miRNA: 3'- gCgAGGGUGCCUGGGcuGGCCUGGcu -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 39872 | 0.73 | 0.240883 |
Target: 5'- gGCUaaaccgucuggacCCCugGGACCUG-CCGGACCu- -3' miRNA: 3'- gCGA-------------GGGugCCUGGGCuGGCCUGGcu -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 40897 | 0.67 | 0.524819 |
Target: 5'- gGC-CCUGCcaaaggaggGGACCCGACCGGguaagcgGCCGc -3' miRNA: 3'- gCGaGGGUG---------CCUGGGCUGGCC-------UGGCu -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 40948 | 0.66 | 0.573959 |
Target: 5'- gGCUCCCA-GG-UCCGGCCuGGCCc- -3' miRNA: 3'- gCGAGGGUgCCuGGGCUGGcCUGGcu -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 50786 | 0.8 | 0.077243 |
Target: 5'- gGgUCCCACGcGCCUGACUGGACCGGc -3' miRNA: 3'- gCgAGGGUGCcUGGGCUGGCCUGGCU- -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 56544 | 0.66 | 0.56325 |
Target: 5'- gCGCUCCCGUGGGagugggguuCCUGGCCGGcaggaggGCCa- -3' miRNA: 3'- -GCGAGGGUGCCU---------GGGCUGGCC-------UGGcu -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 64242 | 0.7 | 0.368836 |
Target: 5'- -aCUCUCACGacagccucGGCCCGACCGGcucugucaagGCCGAc -3' miRNA: 3'- gcGAGGGUGC--------CUGGGCUGGCC----------UGGCU- -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 65935 | 0.7 | 0.341507 |
Target: 5'- aCGCUCCCGCcuuuaggcuggcuagGGACCUGuCCcugGGAUCGGu -3' miRNA: 3'- -GCGAGGGUG---------------CCUGGGCuGG---CCUGGCU- -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 66832 | 0.69 | 0.426109 |
Target: 5'- aGgUCCCcaaacACGGuCCCGGCCGcGGCCu- -3' miRNA: 3'- gCgAGGG-----UGCCuGGGCUGGC-CUGGcu -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 67338 | 0.66 | 0.593543 |
Target: 5'- cCGCUCCCccCaGACCCGccACCGccGCCGGa -3' miRNA: 3'- -GCGAGGGu-GcCUGGGC--UGGCc-UGGCU- -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 67642 | 0.67 | 0.497589 |
Target: 5'- aGCUCCCuuGGACCUugaGAauGGACCc- -3' miRNA: 3'- gCGAGGGugCCUGGG---CUggCCUGGcu -5' |
|||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 72411 | 0.74 | 0.199357 |
Target: 5'- uCGC-CCCugGgccccuaGugCCGACCGGACCGu -3' miRNA: 3'- -GCGaGGGugC-------CugGGCUGGCCUGGCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home