Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 72769 | 0.69 | 0.39273 |
Target: 5'- gGC-CCCGCGGGCCC-AUCgGGACCc- -3' miRNA: 3'- gCGaGGGUGCCUGGGcUGG-CCUGGcu -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 98552 | 0.69 | 0.383853 |
Target: 5'- aGCUCCCGCGGcGCUCaugaGACaagaguaCGGGCCGGc -3' miRNA: 3'- gCGAGGGUGCC-UGGG----CUG-------GCCUGGCU- -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 39668 | 0.7 | 0.376689 |
Target: 5'- uGgUCCCGCGGGUCCucCCGGACCc- -3' miRNA: 3'- gCgAGGGUGCCUGGGcuGGCCUGGcu -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 97367 | 0.7 | 0.368836 |
Target: 5'- aGCUCCUcaACGucaaGCCCGACCGucucaagagccuGACCGAg -3' miRNA: 3'- gCGAGGG--UGCc---UGGGCUGGC------------CUGGCU- -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 64242 | 0.7 | 0.368836 |
Target: 5'- -aCUCUCACGacagccucGGCCCGACCGGcucugucaagGCCGAc -3' miRNA: 3'- gcGAGGGUGC--------CUGGGCUGGCC----------UGGCU- -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 87435 | 0.7 | 0.353471 |
Target: 5'- uGCUggCCAUGGACCCGGCgGcaaaGGCCGAc -3' miRNA: 3'- gCGAg-GGUGCCUGGGCUGgC----CUGGCU- -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 89252 | 0.7 | 0.345959 |
Target: 5'- gGCUCCCACGGcguACCCuGGCCaG-CCGu -3' miRNA: 3'- gCGAGGGUGCC---UGGG-CUGGcCuGGCu -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 65935 | 0.7 | 0.341507 |
Target: 5'- aCGCUCCCGCcuuuaggcuggcuagGGACCUGuCCcugGGAUCGGu -3' miRNA: 3'- -GCGAGGGUG---------------CCUGGGCuGG---CCUGGCU- -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 84553 | 0.71 | 0.309448 |
Target: 5'- cCGCUgCCAUGGccucgucccuaGCCCugguccaacauuuGGCCGGGCCGGg -3' miRNA: 3'- -GCGAgGGUGCC-----------UGGG-------------CUGGCCUGGCU- -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 29395 | 0.72 | 0.28292 |
Target: 5'- aCGCUCCCAagaGGuuguuugACCCcaGGCCGGgcGCCGAa -3' miRNA: 3'- -GCGAGGGUg--CC-------UGGG--CUGGCC--UGGCU- -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 39872 | 0.73 | 0.240883 |
Target: 5'- gGCUaaaccgucuggacCCCugGGACCUG-CCGGACCu- -3' miRNA: 3'- gCGA-------------GGGugCCUGGGCuGGCCUGGcu -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 72411 | 0.74 | 0.199357 |
Target: 5'- uCGC-CCCugGgccccuaGugCCGACCGGACCGu -3' miRNA: 3'- -GCGaGGGugC-------CugGGCUGGCCUGGCu -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 50786 | 0.8 | 0.077243 |
Target: 5'- gGgUCCCACGcGCCUGACUGGACCGGc -3' miRNA: 3'- gCgAGGGUGCcUGGGCUGGCCUGGCU- -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 39561 | 1.08 | 0.000753 |
Target: 5'- cCGCUCCCACGGACCCGACCGGACCGAu -3' miRNA: 3'- -GCGAGGGUGCCUGGGCUGGCCUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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