miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27063 5' -51.9 NC_005832.1 + 72608 0.66 0.964501
Target:  5'- aGUGGACggcguGAAGGGUCCGaaUGGagUCg -3'
miRNA:   3'- cUACCUGg----UUUCCCAGGUagACCa-AG- -5'
27063 5' -51.9 NC_005832.1 + 27942 0.66 0.964501
Target:  5'- --aGGGgCAAAGGGUCCcgCcGGa-- -3'
miRNA:   3'- cuaCCUgGUUUCCCAGGuaGaCCaag -5'
27063 5' -51.9 NC_005832.1 + 22905 0.66 0.959355
Target:  5'- --aGGGCCAuuuuaaacaguuGGGcCCAUCUGGa-- -3'
miRNA:   3'- cuaCCUGGUuu----------CCCaGGUAGACCaag -5'
27063 5' -51.9 NC_005832.1 + 42008 0.66 0.957
Target:  5'- --aGGACCGAGGGGUCaccucuUCcGGg-- -3'
miRNA:   3'- cuaCCUGGUUUCCCAGgu----AGaCCaag -5'
27063 5' -51.9 NC_005832.1 + 72877 0.66 0.948485
Target:  5'- --cGGugCAAAGGGUCCcacgGGcgCa -3'
miRNA:   3'- cuaCCugGUUUCCCAGGuagaCCaaG- -5'
27063 5' -51.9 NC_005832.1 + 61915 0.69 0.850941
Target:  5'- aGAUGGACuCGAGGaGG-CCGUUUGGg-- -3'
miRNA:   3'- -CUACCUG-GUUUC-CCaGGUAGACCaag -5'
27063 5' -51.9 NC_005832.1 + 14280 0.72 0.736806
Target:  5'- --cGGACCccuuacGGGGUCCG-CUGGUUa -3'
miRNA:   3'- cuaCCUGGuu----UCCCAGGUaGACCAAg -5'
27063 5' -51.9 NC_005832.1 + 39401 0.72 0.705228
Target:  5'- aGAUGGACCcuuuGGUCCAUCcGGUg- -3'
miRNA:   3'- -CUACCUGGuuucCCAGGUAGaCCAag -5'
27063 5' -51.9 NC_005832.1 + 72668 0.74 0.607861
Target:  5'- --cGGcCCAAAGGGUCCcgUUGGUc- -3'
miRNA:   3'- cuaCCuGGUUUCCCAGGuaGACCAag -5'
27063 5' -51.9 NC_005832.1 + 73088 0.74 0.575429
Target:  5'- --aGGACCcuGGGGUCCGUCgGGa-- -3'
miRNA:   3'- cuaCCUGGuuUCCCAGGUAGaCCaag -5'
27063 5' -51.9 NC_005832.1 + 76246 0.75 0.543404
Target:  5'- aGAUGGACCAGAGGGUCauaGUCa----- -3'
miRNA:   3'- -CUACCUGGUUUCCCAGg--UAGaccaag -5'
27063 5' -51.9 NC_005832.1 + 72530 0.77 0.45162
Target:  5'- gGGUGGACCcGGGGGUCCcuuGUCgcccuuUGGUUCc -3'
miRNA:   3'- -CUACCUGGuUUCCCAGG---UAG------ACCAAG- -5'
27063 5' -51.9 NC_005832.1 + 39527 1.1 0.003394
Target:  5'- gGAUGGACCAAAGGGUCCAUCUGGUUCg -3'
miRNA:   3'- -CUACCUGGUUUCCCAGGUAGACCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.