miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27064 3' -59.4 NC_005832.1 + 101897 0.66 0.726984
Target:  5'- gUCGUgguacuuuuuuuugAGGGCCGGgaagggcUUGGAcCCCACCa -3'
miRNA:   3'- gGGCGa-------------UCCUGGCC-------AACCU-GGGUGGc -5'
27064 3' -59.4 NC_005832.1 + 54736 0.66 0.724064
Target:  5'- gCCUGCgagAGGACCGGccUGuGCCUGgCGg -3'
miRNA:   3'- -GGGCGa--UCCUGGCCa-ACcUGGGUgGC- -5'
27064 3' -59.4 NC_005832.1 + 66699 0.66 0.714282
Target:  5'- gCCGCggccGGGACCGuGUuuggGGACCUGuCCc -3'
miRNA:   3'- gGGCGa---UCCUGGC-CAa---CCUGGGU-GGc -5'
27064 3' -59.4 NC_005832.1 + 16614 0.66 0.714282
Target:  5'- aCCGCcAGGGCUGGcuccaGGACCguguuGCCGa -3'
miRNA:   3'- gGGCGaUCCUGGCCaa---CCUGGg----UGGC- -5'
27064 3' -59.4 NC_005832.1 + 70933 0.66 0.694522
Target:  5'- aUCCGUUGGGGCUGaucUGcGACgCACCGc -3'
miRNA:   3'- -GGGCGAUCCUGGCca-AC-CUGgGUGGC- -5'
27064 3' -59.4 NC_005832.1 + 91655 0.67 0.684562
Target:  5'- aUUGCUAGGACCc--UGGACCaCGCgGg -3'
miRNA:   3'- gGGCGAUCCUGGccaACCUGG-GUGgC- -5'
27064 3' -59.4 NC_005832.1 + 44742 0.67 0.664523
Target:  5'- -aUGCacagUAGGACCcac-GGACCCACCGa -3'
miRNA:   3'- ggGCG----AUCCUGGccaaCCUGGGUGGC- -5'
27064 3' -59.4 NC_005832.1 + 73077 0.67 0.664523
Target:  5'- gUCCGUcGGGACCuacgGGACCCuguauACCGg -3'
miRNA:   3'- -GGGCGaUCCUGGccaaCCUGGG-----UGGC- -5'
27064 3' -59.4 NC_005832.1 + 95843 0.67 0.644383
Target:  5'- aCC-CUAGGACCGGcaGGAC-CAUCa -3'
miRNA:   3'- gGGcGAUCCUGGCCaaCCUGgGUGGc -5'
27064 3' -59.4 NC_005832.1 + 95633 0.67 0.644383
Target:  5'- aCC-CUAGGACCGGcaGGAC-CAUCa -3'
miRNA:   3'- gGGcGAUCCUGGCCaaCCUGgGUGGc -5'
27064 3' -59.4 NC_005832.1 + 10947 0.68 0.624205
Target:  5'- -gUGCUGGGAggcaCCGGcauGACCCACCu -3'
miRNA:   3'- ggGCGAUCCU----GGCCaacCUGGGUGGc -5'
27064 3' -59.4 NC_005832.1 + 91813 0.68 0.623196
Target:  5'- uCCCGUccucGGGAgCCGGUuuuaggcugcuccUGG-CCCACCu -3'
miRNA:   3'- -GGGCGa---UCCU-GGCCA-------------ACCuGGGUGGc -5'
27064 3' -59.4 NC_005832.1 + 43159 0.68 0.614121
Target:  5'- aCCGUcAGG-CUGGgaaaGGGCCUGCCGg -3'
miRNA:   3'- gGGCGaUCCuGGCCaa--CCUGGGUGGC- -5'
27064 3' -59.4 NC_005832.1 + 39866 0.68 0.614121
Target:  5'- aCCGUcuGGACCccugGGACCUGCCGg -3'
miRNA:   3'- gGGCGauCCUGGccaaCCUGGGUGGC- -5'
27064 3' -59.4 NC_005832.1 + 19837 0.69 0.554133
Target:  5'- cCCUGaCggucuuGGCCGGUUucggaGGACCCGCCGc -3'
miRNA:   3'- -GGGC-Gauc---CUGGCCAA-----CCUGGGUGGC- -5'
27064 3' -59.4 NC_005832.1 + 652 0.69 0.554133
Target:  5'- cCCCGCcgGGGGCUGGUgcagaaagUGGuacucgGCCCACa- -3'
miRNA:   3'- -GGGCGa-UCCUGGCCA--------ACC------UGGGUGgc -5'
27064 3' -59.4 NC_005832.1 + 72803 0.69 0.554133
Target:  5'- aCCC-CUGGGACCaacgGGACCCuuuggGCCGu -3'
miRNA:   3'- -GGGcGAUCCUGGccaaCCUGGG-----UGGC- -5'
27064 3' -59.4 NC_005832.1 + 32341 0.7 0.495993
Target:  5'- cCCCGCcGGGGCUGGagggGGAUCCuugugggcuCCGg -3'
miRNA:   3'- -GGGCGaUCCUGGCCaa--CCUGGGu--------GGC- -5'
27064 3' -59.4 NC_005832.1 + 48121 0.71 0.423149
Target:  5'- --aGCUggAGGACUGGcUGGGCCCugCa -3'
miRNA:   3'- gggCGA--UCCUGGCCaACCUGGGugGc -5'
27064 3' -59.4 NC_005832.1 + 67529 0.76 0.219905
Target:  5'- cCCUGUcacGGACCGGuUUGGGCCCuGCCGu -3'
miRNA:   3'- -GGGCGau-CCUGGCC-AACCUGGG-UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.