miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27064 5' -57 NC_005832.1 + 40965 0.66 0.791512
Target:  5'- gGCCUCUAcggcaggguGGCUCCCagg-UCCGGCc- -3'
miRNA:   3'- -CGGAGAU---------CUGGGGGaguaAGGCCGau -5'
27064 5' -57 NC_005832.1 + 102013 0.66 0.790579
Target:  5'- cGCCUCUugAGGCaacaggagcacauCUCCUCugcUCCGGCg- -3'
miRNA:   3'- -CGGAGA--UCUG-------------GGGGAGua-AGGCCGau -5'
27064 5' -57 NC_005832.1 + 48295 0.66 0.772565
Target:  5'- gGCCUC-AGACgUCCUgGUcaaggCCGGCUu -3'
miRNA:   3'- -CGGAGaUCUGgGGGAgUAa----GGCCGAu -5'
27064 5' -57 NC_005832.1 + 65595 0.66 0.767742
Target:  5'- cGCCggggggagauucgUCaAGACCCCCUCGgcagauucccugCCGGCc- -3'
miRNA:   3'- -CGG-------------AGaUCUGGGGGAGUaa----------GGCCGau -5'
27064 5' -57 NC_005832.1 + 8345 0.66 0.762888
Target:  5'- gGCuCUCacgggUAGACCcgccgcuaCCCUCGcUCCGGCUc -3'
miRNA:   3'- -CG-GAG-----AUCUGG--------GGGAGUaAGGCCGAu -5'
27064 5' -57 NC_005832.1 + 15945 0.66 0.75309
Target:  5'- gGCCUCuUGGAgCgCCUCuc-CCGGCa- -3'
miRNA:   3'- -CGGAG-AUCUgGgGGAGuaaGGCCGau -5'
27064 5' -57 NC_005832.1 + 18230 0.67 0.743179
Target:  5'- aGCUccguaUCUGGugCCUCUCAUUCCGu--- -3'
miRNA:   3'- -CGG-----AGAUCugGGGGAGUAAGGCcgau -5'
27064 5' -57 NC_005832.1 + 32297 0.67 0.723061
Target:  5'- uGCCg-UGGACuCCCCUCGccgcuccUCCGGCc- -3'
miRNA:   3'- -CGGagAUCUG-GGGGAGUa------AGGCCGau -5'
27064 5' -57 NC_005832.1 + 16895 0.68 0.667321
Target:  5'- gGCCUCgacagugucggggAGACCuCCCUCGaggUCGGCg- -3'
miRNA:   3'- -CGGAGa------------UCUGG-GGGAGUaa-GGCCGau -5'
27064 5' -57 NC_005832.1 + 32125 0.68 0.65057
Target:  5'- aGCCUCgc--CCCCCUCAccaCGGCa- -3'
miRNA:   3'- -CGGAGaucuGGGGGAGUaagGCCGau -5'
27064 5' -57 NC_005832.1 + 85805 0.69 0.608597
Target:  5'- gGCUUCUuuGCCUCCUCggUCuCGGCUu -3'
miRNA:   3'- -CGGAGAucUGGGGGAGuaAG-GCCGAu -5'
27064 5' -57 NC_005832.1 + 32181 0.69 0.608597
Target:  5'- gGUCUgggaUUGGGCUCCCUCAggaCGGCUGa -3'
miRNA:   3'- -CGGA----GAUCUGGGGGAGUaagGCCGAU- -5'
27064 5' -57 NC_005832.1 + 45842 0.69 0.586646
Target:  5'- -aCUCUGGACCCCCgUCGguacccguaauuuUUCUGGUUu -3'
miRNA:   3'- cgGAGAUCUGGGGG-AGU-------------AAGGCCGAu -5'
27064 5' -57 NC_005832.1 + 36787 0.72 0.438665
Target:  5'- cGCCUacGGGCCCUaCUCGUUCgCGGCUc -3'
miRNA:   3'- -CGGAgaUCUGGGG-GAGUAAG-GCCGAu -5'
27064 5' -57 NC_005832.1 + 98204 0.73 0.368444
Target:  5'- gGCCUCUuggAGACCCuCCUCAccuucggUCUGGCc- -3'
miRNA:   3'- -CGGAGA---UCUGGG-GGAGUa------AGGCCGau -5'
27064 5' -57 NC_005832.1 + 39894 1.08 0.001482
Target:  5'- gGCCUCUAGACCCCCUCAUUCCGGCUAa -3'
miRNA:   3'- -CGGAGAUCUGGGGGAGUAAGGCCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.