miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27066 5' -61 NC_005832.1 + 5332 0.66 0.605533
Target:  5'- -cCCUCgACGGCGGGGUcgucGuGCUCCaGGg -3'
miRNA:   3'- ccGGAGaUGCCGUCCCA----C-CGAGGgUC- -5'
27066 5' -61 NC_005832.1 + 52369 0.66 0.585314
Target:  5'- cGCCUCcAgGGgAGGagggucGUGGCUCCUGGc -3'
miRNA:   3'- cCGGAGaUgCCgUCC------CACCGAGGGUC- -5'
27066 5' -61 NC_005832.1 + 87555 0.66 0.572239
Target:  5'- cGGCCaUCacagACGGCAuGGUgccuccggaccaaaGGCUCCUGGa -3'
miRNA:   3'- -CCGG-AGa---UGCCGUcCCA--------------CCGAGGGUC- -5'
27066 5' -61 NC_005832.1 + 39459 0.66 0.565227
Target:  5'- gGGCCUCaGgGGCAGaGGggaaucagGGgUCCuCAGg -3'
miRNA:   3'- -CCGGAGaUgCCGUC-CCa-------CCgAGG-GUC- -5'
27066 5' -61 NC_005832.1 + 27210 0.67 0.545325
Target:  5'- cGGCgCUCgucgaggagUACGGagaAGGG-GGCUCCgGGu -3'
miRNA:   3'- -CCG-GAG---------AUGCCg--UCCCaCCGAGGgUC- -5'
27066 5' -61 NC_005832.1 + 98143 0.67 0.53251
Target:  5'- cGGCCgua--GGCAGGacauaucacacccuGUGGC-CCCAGg -3'
miRNA:   3'- -CCGGagaugCCGUCC--------------CACCGaGGGUC- -5'
27066 5' -61 NC_005832.1 + 67221 0.67 0.525654
Target:  5'- uGGCCUCgUACGGaguggccucCAGGGccucGGCgUCCAGg -3'
miRNA:   3'- -CCGGAG-AUGCC---------GUCCCa---CCGaGGGUC- -5'
27066 5' -61 NC_005832.1 + 32500 0.67 0.515919
Target:  5'- gGGCC-CUAC-GCGGGcGcaaUGGCUCCCu- -3'
miRNA:   3'- -CCGGaGAUGcCGUCC-C---ACCGAGGGuc -5'
27066 5' -61 NC_005832.1 + 100203 0.68 0.487173
Target:  5'- cGGCUUCUACaagGGGGUGGUgCCCGa -3'
miRNA:   3'- -CCGGAGAUGccgUCCCACCGaGGGUc -5'
27066 5' -61 NC_005832.1 + 96562 0.68 0.472153
Target:  5'- cGCCUUgcagucuuuUGCGGCGGGGgcagaguaggauccGGCUCUCAc -3'
miRNA:   3'- cCGGAG---------AUGCCGUCCCa-------------CCGAGGGUc -5'
27066 5' -61 NC_005832.1 + 81301 0.68 0.453715
Target:  5'- cGGUCUCU--GGCAGGGgccacGGCaccgcaaggccccguUCCCAGu -3'
miRNA:   3'- -CCGGAGAugCCGUCCCa----CCG---------------AGGGUC- -5'
27066 5' -61 NC_005832.1 + 16357 0.68 0.450074
Target:  5'- cGCCUcCUGCGGCcgccGcGGUGGC-CUCAGc -3'
miRNA:   3'- cCGGA-GAUGCCGu---C-CCACCGaGGGUC- -5'
27066 5' -61 NC_005832.1 + 9898 0.7 0.392457
Target:  5'- cGGCCUCcgcggccgACgcgcccgacgaagcgGGCAGGGgaccgGGCUCCaCGGa -3'
miRNA:   3'- -CCGGAGa-------UG---------------CCGUCCCa----CCGAGG-GUC- -5'
27066 5' -61 NC_005832.1 + 56169 0.7 0.341373
Target:  5'- cGGCCUCUACcagGGCAagggagauccGGG-GGCaagaCCCAGg -3'
miRNA:   3'- -CCGGAGAUG---CCGU----------CCCaCCGa---GGGUC- -5'
27066 5' -61 NC_005832.1 + 26609 0.72 0.27154
Target:  5'- cGGCCUUUAaggUGGCGagggccgccGGGUGGCUgCCCGa -3'
miRNA:   3'- -CCGGAGAU---GCCGU---------CCCACCGA-GGGUc -5'
27066 5' -61 NC_005832.1 + 78870 0.73 0.22982
Target:  5'- aGGaCUUUGCGGcCAGGGUGGCagagUCCCuGa -3'
miRNA:   3'- -CCgGAGAUGCC-GUCCCACCG----AGGGuC- -5'
27066 5' -61 NC_005832.1 + 40966 1.1 0.000508
Target:  5'- gGGCCUCUACGGCAGGGUGGCUCCCAGg -3'
miRNA:   3'- -CCGGAGAUGCCGUCCCACCGAGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.