Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2707 | 3' | -59.6 | NC_001491.2 | + | 1790 | 0.68 | 0.638193 |
Target: 5'- cGCCGUc-CACGCCCGCggccgcucUGCCCcgCGUu -3' miRNA: 3'- -CGGCGauGUGCGGGUG--------GCGGGuaGUA- -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 28600 | 0.68 | 0.637185 |
Target: 5'- aGCCGC-GCGCGCUagguaugUAgCGUCCAUCAUc -3' miRNA: 3'- -CGGCGaUGUGCGG-------GUgGCGGGUAGUA- -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 110577 | 0.68 | 0.618035 |
Target: 5'- uGCC-CUACccagacauaGCGUCCACCaGCCCAUUg- -3' miRNA: 3'- -CGGcGAUG---------UGCGGGUGG-CGGGUAGua -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 96341 | 0.68 | 0.587892 |
Target: 5'- gGCCGCUggaggcgcaggcAgGCGCCCaggACCGCCaCAUUg- -3' miRNA: 3'- -CGGCGA------------UgUGCGGG---UGGCGG-GUAGua -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 26667 | 0.69 | 0.577898 |
Target: 5'- cCUGCUuuACGCGCCCAUCGCCg----- -3' miRNA: 3'- cGGCGA--UGUGCGGGUGGCGGguagua -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 75088 | 0.69 | 0.558029 |
Target: 5'- -gCGCUAUACccaaCCCACCGauCCCGUCAa -3' miRNA: 3'- cgGCGAUGUGc---GGGUGGC--GGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 122987 | 0.69 | 0.548165 |
Target: 5'- cCCGUc-CGCGCCCGCC-CCCGUCc- -3' miRNA: 3'- cGGCGauGUGCGGGUGGcGGGUAGua -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 116696 | 0.69 | 0.548165 |
Target: 5'- gGCCGCUccggggaccaGgGCGCCCagGCCGUCCGccuUCAg -3' miRNA: 3'- -CGGCGA----------UgUGCGGG--UGGCGGGU---AGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 43051 | 0.7 | 0.51893 |
Target: 5'- --gGCUAUcuuuGCGgCCGCCGCCCGUCc- -3' miRNA: 3'- cggCGAUG----UGCgGGUGGCGGGUAGua -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149766 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149730 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149694 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149658 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149622 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149586 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149550 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149514 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149478 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149442 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149802 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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