miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27074 3' -52.1 NC_005832.1 + 1241 0.66 0.964273
Target:  5'- -gGACGccggcugggccaccaGGCCCGACGccGugUGCGc- -3'
miRNA:   3'- gaCUGC---------------UCGGGCUGCuuCugAUGUau -5'
27074 3' -52.1 NC_005832.1 + 745 0.66 0.962857
Target:  5'- -cGGCGAGucuCCCGGCcuggccgaGAGGuACUGCAUGa -3'
miRNA:   3'- gaCUGCUC---GGGCUG--------CUUC-UGAUGUAU- -5'
27074 3' -52.1 NC_005832.1 + 86911 0.66 0.946505
Target:  5'- cCUGAUGGGaCCGugcACaAAGACUGCAUGc -3'
miRNA:   3'- -GACUGCUCgGGC---UGcUUCUGAUGUAU- -5'
27074 3' -52.1 NC_005832.1 + 8280 0.66 0.946505
Target:  5'- uUGACGAGCCCauggugaagguGcCGGAGGCggacgGCAg- -3'
miRNA:   3'- gACUGCUCGGG-----------CuGCUUCUGa----UGUau -5'
27074 3' -52.1 NC_005832.1 + 28098 0.67 0.936786
Target:  5'- -cGugGAGguugCgGGCGGAGACUACAa- -3'
miRNA:   3'- gaCugCUCg---GgCUGCUUCUGAUGUau -5'
27074 3' -52.1 NC_005832.1 + 85702 0.67 0.93153
Target:  5'- -cGACGAaaaGCUgGACGA-GGCUACAg- -3'
miRNA:   3'- gaCUGCU---CGGgCUGCUuCUGAUGUau -5'
27074 3' -52.1 NC_005832.1 + 35731 0.67 0.926008
Target:  5'- uCUGGCGucGGCagaaGACGggGGCUGCu-- -3'
miRNA:   3'- -GACUGC--UCGgg--CUGCuuCUGAUGuau -5'
27074 3' -52.1 NC_005832.1 + 93071 0.67 0.925441
Target:  5'- aCUGAUaGAGCCCGucuuacgACGAGGACccaaaUGCGUu -3'
miRNA:   3'- -GACUG-CUCGGGC-------UGCUUCUG-----AUGUAu -5'
27074 3' -52.1 NC_005832.1 + 41624 0.68 0.914166
Target:  5'- -cGAgGAGCCCGAUGAcGACggggucgACGg- -3'
miRNA:   3'- gaCUgCUCGGGCUGCUuCUGa------UGUau -5'
27074 3' -52.1 NC_005832.1 + 13111 0.68 0.913546
Target:  5'- cCUGACGGaCCCcgaGACGGugcaggucaugacGGACUACGUGg -3'
miRNA:   3'- -GACUGCUcGGG---CUGCU-------------UCUGAUGUAU- -5'
27074 3' -52.1 NC_005832.1 + 12424 0.68 0.89443
Target:  5'- cCUGAUGAGCUCGGCaGAcacGGGCUucuGCAc- -3'
miRNA:   3'- -GACUGCUCGGGCUG-CU---UCUGA---UGUau -5'
27074 3' -52.1 NC_005832.1 + 71968 0.69 0.879991
Target:  5'- -gGACGAuCCCaACGAuccAGGCUGCAUGa -3'
miRNA:   3'- gaCUGCUcGGGcUGCU---UCUGAUGUAU- -5'
27074 3' -52.1 NC_005832.1 + 42219 0.69 0.8724
Target:  5'- -aGGCGGGCCUGAUGuGAGGC-ACAa- -3'
miRNA:   3'- gaCUGCUCGGGCUGC-UUCUGaUGUau -5'
27074 3' -52.1 NC_005832.1 + 13027 0.69 0.8724
Target:  5'- uUGACGAGCCUcuCGGAGACgGCu-- -3'
miRNA:   3'- gACUGCUCGGGcuGCUUCUGaUGuau -5'
27074 3' -52.1 NC_005832.1 + 68196 0.69 0.8724
Target:  5'- uCUGugGAagagGCCUgguGACGAGGGCUACc-- -3'
miRNA:   3'- -GACugCU----CGGG---CUGCUUCUGAUGuau -5'
27074 3' -52.1 NC_005832.1 + 67030 0.7 0.822076
Target:  5'- cCUGGCGgcGGCCgUGGCGAGGGCcgcggGCGUAa -3'
miRNA:   3'- -GACUGC--UCGG-GCUGCUUCUGa----UGUAU- -5'
27074 3' -52.1 NC_005832.1 + 12982 0.71 0.794206
Target:  5'- -aGACGccCCCGACGAGGccgagcuguGCUGCGUAa -3'
miRNA:   3'- gaCUGCucGGGCUGCUUC---------UGAUGUAU- -5'
27074 3' -52.1 NC_005832.1 + 9911 0.71 0.744642
Target:  5'- -cGACGcGCCCGACGAAGcggGCAg- -3'
miRNA:   3'- gaCUGCuCGGGCUGCUUCugaUGUau -5'
27074 3' -52.1 NC_005832.1 + 101980 0.75 0.574075
Target:  5'- -cGACaAGCUCGugGggGACUACGa- -3'
miRNA:   3'- gaCUGcUCGGGCugCuuCUGAUGUau -5'
27074 3' -52.1 NC_005832.1 + 79947 0.78 0.386544
Target:  5'- -cGugGAGCCCGACGuGGACUGgGa- -3'
miRNA:   3'- gaCugCUCGGGCUGCuUCUGAUgUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.