miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27076 5' -47.3 NC_005832.1 + 87590 0.66 0.999157
Target:  5'- -uGG-AGAC---GAGGUGGGAGACGUc -3'
miRNA:   3'- cuCCaUUUGagaCUCCACCUUUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 45605 0.66 0.999101
Target:  5'- aAGGUAguggaggacauaaaGACUCUGAGGgccugccccGAAAugGUa -3'
miRNA:   3'- cUCCAU--------------UUGAGACUCCac-------CUUUugCG- -5'
27076 5' -47.3 NC_005832.1 + 70515 0.66 0.998958
Target:  5'- ----cAGACUCUGAGGacGAGGACGa -3'
miRNA:   3'- cuccaUUUGAGACUCCacCUUUUGCg -5'
27076 5' -47.3 NC_005832.1 + 875 0.66 0.998958
Target:  5'- cAGGUGccC-CUG-GGUGuGAAGGCGCu -3'
miRNA:   3'- cUCCAUuuGaGACuCCAC-CUUUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 79451 0.66 0.998958
Target:  5'- -cGGUGggUUCUGGGGcuuuggauuuucUGGGAGGCc- -3'
miRNA:   3'- cuCCAUuuGAGACUCC------------ACCUUUUGcg -5'
27076 5' -47.3 NC_005832.1 + 102266 0.66 0.998936
Target:  5'- -cGGUAcgccACUCUGAGGgucaagaccacuUgccuccuGGAGAACGCa -3'
miRNA:   3'- cuCCAUu---UGAGACUCC------------A-------CCUUUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 1449 0.66 0.998721
Target:  5'- aGAGGggGGC-CUGuGGcUGGGgaggGGACGCu -3'
miRNA:   3'- -CUCCauUUGaGACuCC-ACCU----UUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 79971 0.66 0.998439
Target:  5'- cAGGUGGAggaggGAGGUGGggGACc- -3'
miRNA:   3'- cUCCAUUUgaga-CUCCACCuuUUGcg -5'
27076 5' -47.3 NC_005832.1 + 6435 0.67 0.998107
Target:  5'- cGAGG-AGACggUGAGGaUGGuggccGACGCg -3'
miRNA:   3'- -CUCCaUUUGagACUCC-ACCuu---UUGCG- -5'
27076 5' -47.3 NC_005832.1 + 30120 0.67 0.997262
Target:  5'- -uGGUGAGCUCccUGGGGUuccucGACGCg -3'
miRNA:   3'- cuCCAUUUGAG--ACUCCAccuu-UUGCG- -5'
27076 5' -47.3 NC_005832.1 + 85518 0.67 0.997262
Target:  5'- uGAGGguuUGGAUggUGAGcuUGGAGAGCGCg -3'
miRNA:   3'- -CUCC---AUUUGagACUCc-ACCUUUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 5425 0.67 0.996735
Target:  5'- gGAGGUGGAC---GAGGUGG-GggUGCc -3'
miRNA:   3'- -CUCCAUUUGagaCUCCACCuUuuGCG- -5'
27076 5' -47.3 NC_005832.1 + 9329 0.67 0.996126
Target:  5'- aAGGUGGACUugaggaagCUGAcGGUGGGcaggAggUGCg -3'
miRNA:   3'- cUCCAUUUGA--------GACU-CCACCU----UuuGCG- -5'
27076 5' -47.3 NC_005832.1 + 20418 0.67 0.996126
Target:  5'- gGAGGguuAGCgUCgagGAGGUGGu--ACGUg -3'
miRNA:   3'- -CUCCau-UUG-AGa--CUCCACCuuuUGCG- -5'
27076 5' -47.3 NC_005832.1 + 63897 0.68 0.99372
Target:  5'- cAGGUAccagCUGAGGaggacGGAGAugGCg -3'
miRNA:   3'- cUCCAUuugaGACUCCa----CCUUUugCG- -5'
27076 5' -47.3 NC_005832.1 + 5676 0.68 0.99372
Target:  5'- -cGGUGgu-UCUGAGGagcUGGAAGACGg -3'
miRNA:   3'- cuCCAUuugAGACUCC---ACCUUUUGCg -5'
27076 5' -47.3 NC_005832.1 + 92893 0.68 0.992693
Target:  5'- gGAGGacagaUGGACuuUCUGGGacuguUGGAAAACGCa -3'
miRNA:   3'- -CUCC-----AUUUG--AGACUCc----ACCUUUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 4986 0.68 0.992693
Target:  5'- aGGGUAggGACUCUGAcGUGGAcAGgGUc -3'
miRNA:   3'- cUCCAU--UUGAGACUcCACCUuUUgCG- -5'
27076 5' -47.3 NC_005832.1 + 42627 0.69 0.99024
Target:  5'- uGGGGUGGAUggUCaaGAGGaUGGcgGACGCg -3'
miRNA:   3'- -CUCCAUUUG--AGa-CUCC-ACCuuUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 103557 0.69 0.99024
Target:  5'- cGAGGgcGGCagagUCUG-GGUGGAGggUGg -3'
miRNA:   3'- -CUCCauUUG----AGACuCCACCUUuuGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.