miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27076 5' -47.3 NC_005832.1 + 55027 0.69 0.987183
Target:  5'- aAGGUGc-CUCaaGGGUGGAGGAUGCc -3'
miRNA:   3'- cUCCAUuuGAGacUCCACCUUUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 16480 0.69 0.985402
Target:  5'- aGAGGUGGugcccgguGCUgaCUGGGaUGGAGGugGCa -3'
miRNA:   3'- -CUCCAUU--------UGA--GACUCcACCUUUugCG- -5'
27076 5' -47.3 NC_005832.1 + 35432 0.7 0.976071
Target:  5'- uGGGGUAcgugaccGACgugCUGucuguggacuGGGUGGGAGACGUc -3'
miRNA:   3'- -CUCCAU-------UUGa--GAC----------UCCACCUUUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 34102 0.7 0.973541
Target:  5'- uGAGGUAAAUcCUGuuGUGGGAccCGCc -3'
miRNA:   3'- -CUCCAUUUGaGACucCACCUUuuGCG- -5'
27076 5' -47.3 NC_005832.1 + 58767 0.71 0.970192
Target:  5'- cGGGG-AGGCUCUcaagagaGAGGUGGcAAAgGCa -3'
miRNA:   3'- -CUCCaUUUGAGA-------CUCCACCuUUUgCG- -5'
27076 5' -47.3 NC_005832.1 + 46978 0.71 0.961476
Target:  5'- uGGGaccUGGACUCUGAGGccagGGAGcugaggagggagaggGACGCu -3'
miRNA:   3'- cUCC---AUUUGAGACUCCa---CCUU---------------UUGCG- -5'
27076 5' -47.3 NC_005832.1 + 19621 0.71 0.959934
Target:  5'- gGAGGgaGACccgUUGaAGGUGGGAGACGa -3'
miRNA:   3'- -CUCCauUUGa--GAC-UCCACCUUUUGCg -5'
27076 5' -47.3 NC_005832.1 + 96608 0.71 0.955892
Target:  5'- aGGGUAAAgaggGAGGUGGAGAGCa- -3'
miRNA:   3'- cUCCAUUUgagaCUCCACCUUUUGcg -5'
27076 5' -47.3 NC_005832.1 + 78914 0.71 0.955892
Target:  5'- aGAGGUAGACcCcu-GGUGGAGAugGg -3'
miRNA:   3'- -CUCCAUUUGaGacuCCACCUUUugCg -5'
27076 5' -47.3 NC_005832.1 + 66517 0.72 0.946998
Target:  5'- uGAGGUAcgcCUUUGGGGUGGc-AGCGUc -3'
miRNA:   3'- -CUCCAUuu-GAGACUCCACCuuUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 4867 0.72 0.942137
Target:  5'- aGAGGcc-GCUCgUGAGGcUGGuAGACGCu -3'
miRNA:   3'- -CUCCauuUGAG-ACUCC-ACCuUUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 29311 0.76 0.788544
Target:  5'- aGAGGgGAcCUCUGAGGUGcu-GGCGCa -3'
miRNA:   3'- -CUCCaUUuGAGACUCCACcuuUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 31263 0.79 0.626882
Target:  5'- aGGGUuuACUCgGAGGUGGGguGGAUGCa -3'
miRNA:   3'- cUCCAuuUGAGaCUCCACCU--UUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 90749 0.84 0.415806
Target:  5'- gGAGGcUAGACUCUGAGGUGcucGACGCc -3'
miRNA:   3'- -CUCC-AUUUGAGACUCCACcuuUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 48052 1.12 0.00892
Target:  5'- gGAGGUAAACUCUGAGGUGGAAAACGCc -3'
miRNA:   3'- -CUCCAUUUGAGACUCCACCUUUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.