miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27076 5' -47.3 NC_005832.1 + 875 0.66 0.998958
Target:  5'- cAGGUGccC-CUG-GGUGuGAAGGCGCu -3'
miRNA:   3'- cUCCAUuuGaGACuCCAC-CUUUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 1449 0.66 0.998721
Target:  5'- aGAGGggGGC-CUGuGGcUGGGgaggGGACGCu -3'
miRNA:   3'- -CUCCauUUGaGACuCC-ACCU----UUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 4867 0.72 0.942137
Target:  5'- aGAGGcc-GCUCgUGAGGcUGGuAGACGCu -3'
miRNA:   3'- -CUCCauuUGAG-ACUCC-ACCuUUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 4986 0.68 0.992693
Target:  5'- aGGGUAggGACUCUGAcGUGGAcAGgGUc -3'
miRNA:   3'- cUCCAU--UUGAGACUcCACCUuUUgCG- -5'
27076 5' -47.3 NC_005832.1 + 5425 0.67 0.996735
Target:  5'- gGAGGUGGAC---GAGGUGG-GggUGCc -3'
miRNA:   3'- -CUCCAUUUGagaCUCCACCuUuuGCG- -5'
27076 5' -47.3 NC_005832.1 + 5676 0.68 0.99372
Target:  5'- -cGGUGgu-UCUGAGGagcUGGAAGACGg -3'
miRNA:   3'- cuCCAUuugAGACUCC---ACCUUUUGCg -5'
27076 5' -47.3 NC_005832.1 + 6435 0.67 0.998107
Target:  5'- cGAGG-AGACggUGAGGaUGGuggccGACGCg -3'
miRNA:   3'- -CUCCaUUUGagACUCC-ACCuu---UUGCG- -5'
27076 5' -47.3 NC_005832.1 + 9329 0.67 0.996126
Target:  5'- aAGGUGGACUugaggaagCUGAcGGUGGGcaggAggUGCg -3'
miRNA:   3'- cUCCAUUUGA--------GACU-CCACCU----UuuGCG- -5'
27076 5' -47.3 NC_005832.1 + 16480 0.69 0.985402
Target:  5'- aGAGGUGGugcccgguGCUgaCUGGGaUGGAGGugGCa -3'
miRNA:   3'- -CUCCAUU--------UGA--GACUCcACCUUUugCG- -5'
27076 5' -47.3 NC_005832.1 + 19621 0.71 0.959934
Target:  5'- gGAGGgaGACccgUUGaAGGUGGGAGACGa -3'
miRNA:   3'- -CUCCauUUGa--GAC-UCCACCUUUUGCg -5'
27076 5' -47.3 NC_005832.1 + 20418 0.67 0.996126
Target:  5'- gGAGGguuAGCgUCgagGAGGUGGu--ACGUg -3'
miRNA:   3'- -CUCCau-UUG-AGa--CUCCACCuuuUGCG- -5'
27076 5' -47.3 NC_005832.1 + 29311 0.76 0.788544
Target:  5'- aGAGGgGAcCUCUGAGGUGcu-GGCGCa -3'
miRNA:   3'- -CUCCaUUuGAGACUCCACcuuUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 30120 0.67 0.997262
Target:  5'- -uGGUGAGCUCccUGGGGUuccucGACGCg -3'
miRNA:   3'- cuCCAUUUGAG--ACUCCAccuu-UUGCG- -5'
27076 5' -47.3 NC_005832.1 + 31263 0.79 0.626882
Target:  5'- aGGGUuuACUCgGAGGUGGGguGGAUGCa -3'
miRNA:   3'- cUCCAuuUGAGaCUCCACCU--UUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 34102 0.7 0.973541
Target:  5'- uGAGGUAAAUcCUGuuGUGGGAccCGCc -3'
miRNA:   3'- -CUCCAUUUGaGACucCACCUUuuGCG- -5'
27076 5' -47.3 NC_005832.1 + 35432 0.7 0.976071
Target:  5'- uGGGGUAcgugaccGACgugCUGucuguggacuGGGUGGGAGACGUc -3'
miRNA:   3'- -CUCCAU-------UUGa--GAC----------UCCACCUUUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 42627 0.69 0.99024
Target:  5'- uGGGGUGGAUggUCaaGAGGaUGGcgGACGCg -3'
miRNA:   3'- -CUCCAUUUG--AGa-CUCC-ACCuuUUGCG- -5'
27076 5' -47.3 NC_005832.1 + 45605 0.66 0.999101
Target:  5'- aAGGUAguggaggacauaaaGACUCUGAGGgccugccccGAAAugGUa -3'
miRNA:   3'- cUCCAU--------------UUGAGACUCCac-------CUUUugCG- -5'
27076 5' -47.3 NC_005832.1 + 46978 0.71 0.961476
Target:  5'- uGGGaccUGGACUCUGAGGccagGGAGcugaggagggagaggGACGCu -3'
miRNA:   3'- cUCC---AUUUGAGACUCCa---CCUU---------------UUGCG- -5'
27076 5' -47.3 NC_005832.1 + 48052 1.12 0.00892
Target:  5'- gGAGGUAAACUCUGAGGUGGAAAACGCc -3'
miRNA:   3'- -CUCCAUUUGAGACUCCACCUUUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.