Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27076 | 5' | -47.3 | NC_005832.1 | + | 875 | 0.66 | 0.998958 |
Target: 5'- cAGGUGccC-CUG-GGUGuGAAGGCGCu -3' miRNA: 3'- cUCCAUuuGaGACuCCAC-CUUUUGCG- -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 5676 | 0.68 | 0.99372 |
Target: 5'- -cGGUGgu-UCUGAGGagcUGGAAGACGg -3' miRNA: 3'- cuCCAUuugAGACUCC---ACCUUUUGCg -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 63897 | 0.68 | 0.99372 |
Target: 5'- cAGGUAccagCUGAGGaggacGGAGAugGCg -3' miRNA: 3'- cUCCAUuugaGACUCCa----CCUUUugCG- -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 20418 | 0.67 | 0.996126 |
Target: 5'- gGAGGguuAGCgUCgagGAGGUGGu--ACGUg -3' miRNA: 3'- -CUCCau-UUG-AGa--CUCCACCuuuUGCG- -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 5425 | 0.67 | 0.996735 |
Target: 5'- gGAGGUGGAC---GAGGUGG-GggUGCc -3' miRNA: 3'- -CUCCAUUUGagaCUCCACCuUuuGCG- -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 85518 | 0.67 | 0.997262 |
Target: 5'- uGAGGguuUGGAUggUGAGcuUGGAGAGCGCg -3' miRNA: 3'- -CUCC---AUUUGagACUCc-ACCUUUUGCG- -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 6435 | 0.67 | 0.998107 |
Target: 5'- cGAGG-AGACggUGAGGaUGGuggccGACGCg -3' miRNA: 3'- -CUCCaUUUGagACUCC-ACCuu---UUGCG- -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 79971 | 0.66 | 0.998439 |
Target: 5'- cAGGUGGAggaggGAGGUGGggGACc- -3' miRNA: 3'- cUCCAUUUgaga-CUCCACCuuUUGcg -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 102266 | 0.66 | 0.998936 |
Target: 5'- -cGGUAcgccACUCUGAGGgucaagaccacuUgccuccuGGAGAACGCa -3' miRNA: 3'- cuCCAUu---UGAGACUCC------------A-------CCUUUUGCG- -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 4986 | 0.68 | 0.992693 |
Target: 5'- aGGGUAggGACUCUGAcGUGGAcAGgGUc -3' miRNA: 3'- cUCCAU--UUGAGACUcCACCUuUUgCG- -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 92893 | 0.68 | 0.992693 |
Target: 5'- gGAGGacagaUGGACuuUCUGGGacuguUGGAAAACGCa -3' miRNA: 3'- -CUCC-----AUUUG--AGACUCc----ACCUUUUGCG- -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 42627 | 0.69 | 0.99024 |
Target: 5'- uGGGGUGGAUggUCaaGAGGaUGGcgGACGCg -3' miRNA: 3'- -CUCCAUUUG--AGa-CUCC-ACCuuUUGCG- -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 4867 | 0.72 | 0.942137 |
Target: 5'- aGAGGcc-GCUCgUGAGGcUGGuAGACGCu -3' miRNA: 3'- -CUCCauuUGAG-ACUCC-ACCuUUUGCG- -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 66517 | 0.72 | 0.946998 |
Target: 5'- uGAGGUAcgcCUUUGGGGUGGc-AGCGUc -3' miRNA: 3'- -CUCCAUuu-GAGACUCCACCuuUUGCG- -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 78914 | 0.71 | 0.955892 |
Target: 5'- aGAGGUAGACcCcu-GGUGGAGAugGg -3' miRNA: 3'- -CUCCAUUUGaGacuCCACCUUUugCg -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 96608 | 0.71 | 0.955892 |
Target: 5'- aGGGUAAAgaggGAGGUGGAGAGCa- -3' miRNA: 3'- cUCCAUUUgagaCUCCACCUUUUGcg -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 19621 | 0.71 | 0.959934 |
Target: 5'- gGAGGgaGACccgUUGaAGGUGGGAGACGa -3' miRNA: 3'- -CUCCauUUGa--GAC-UCCACCUUUUGCg -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 58767 | 0.71 | 0.970192 |
Target: 5'- cGGGG-AGGCUCUcaagagaGAGGUGGcAAAgGCa -3' miRNA: 3'- -CUCCaUUUGAGA-------CUCCACCuUUUgCG- -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 16480 | 0.69 | 0.985402 |
Target: 5'- aGAGGUGGugcccgguGCUgaCUGGGaUGGAGGugGCa -3' miRNA: 3'- -CUCCAUU--------UGA--GACUCcACCUUUugCG- -5' |
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27076 | 5' | -47.3 | NC_005832.1 | + | 55027 | 0.69 | 0.987183 |
Target: 5'- aAGGUGc-CUCaaGGGUGGAGGAUGCc -3' miRNA: 3'- cUCCAUuuGAGacUCCACCUUUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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