Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27079 | 3' | -52.7 | NC_005832.1 | + | 31454 | 0.68 | 0.890724 |
Target: 5'- -aCAGACagaGUcAGGGGCUUcaucuagacGGGCCACa -3' miRNA: 3'- gaGUCUGg--UA-UUCCUGAA---------CCCGGUGg -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 11998 | 0.68 | 0.890724 |
Target: 5'- gUCGGACCGUuucgAAGG-C-UGGGCCGg- -3' miRNA: 3'- gAGUCUGGUA----UUCCuGaACCCGGUgg -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 80775 | 0.68 | 0.890724 |
Target: 5'- gUCGGACCAaGAGGGgUUGGGgaugaggACCg -3' miRNA: 3'- gAGUCUGGUaUUCCUgAACCCgg-----UGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 55664 | 0.68 | 0.883545 |
Target: 5'- uCUCcuGCCGUGGGGACU-GGGacuCCugCu -3' miRNA: 3'- -GAGucUGGUAUUCCUGAaCCC---GGugG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 2147 | 0.68 | 0.882814 |
Target: 5'- --aGGACCGUcuuaaaguccgagGGGGACa-GGGCCACg -3' miRNA: 3'- gagUCUGGUA-------------UUCCUGaaCCCGGUGg -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 1592 | 0.68 | 0.876121 |
Target: 5'- gCUguGGCCAUGAGGGCcugcUGGaggcaguuGuCCACCg -3' miRNA: 3'- -GAguCUGGUAUUCCUGa---ACC--------C-GGUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 1256 | 0.68 | 0.868458 |
Target: 5'- ---cGACCuguccucgcGGGACgccggcUGGGCCACCa -3' miRNA: 3'- gaguCUGGuau------UCCUGa-----ACCCGGUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 67384 | 0.69 | 0.860562 |
Target: 5'- -cCAGACCuaccUGAGGACggucgGGGCgGaCCu -3' miRNA: 3'- gaGUCUGGu---AUUCCUGaa---CCCGgU-GG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 87227 | 0.69 | 0.860562 |
Target: 5'- gCUCAcucCCcUGAGGAgagugaggUGGGCCACCa -3' miRNA: 3'- -GAGUcu-GGuAUUCCUga------ACCCGGUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 26609 | 0.69 | 0.852439 |
Target: 5'- ---cGGCCuuUAAGGugGCgaGGGCCGCCg -3' miRNA: 3'- gaguCUGGu-AUUCC--UGaaCCCGGUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 11884 | 0.69 | 0.84746 |
Target: 5'- aCUCGG-CgGUGAGGGCUccgucucccauagcGGGCCGCa -3' miRNA: 3'- -GAGUCuGgUAUUCCUGAa-------------CCCGGUGg -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 7447 | 0.69 | 0.835543 |
Target: 5'- gUCAGAaacCCAUGAGGAggcagugcgUGGuGCCGCUg -3' miRNA: 3'- gAGUCU---GGUAUUCCUga-------ACC-CGGUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 41989 | 0.69 | 0.835543 |
Target: 5'- uUCGG-CCGUGugcuggaccAGGACcgagGGGUCACCu -3' miRNA: 3'- gAGUCuGGUAU---------UCCUGaa--CCCGGUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 56200 | 0.69 | 0.835543 |
Target: 5'- -aCAGggcACCGUAAccgucgguGGACUUGagcuuGGCCACCg -3' miRNA: 3'- gaGUC---UGGUAUU--------CCUGAAC-----CCGGUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 72983 | 0.69 | 0.826786 |
Target: 5'- gUCuGGGCCcUGAGGGCgcucaGGGCC-CCa -3' miRNA: 3'- gAG-UCUGGuAUUCCUGaa---CCCGGuGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 97877 | 0.7 | 0.799386 |
Target: 5'- gUCAGACCGUccGG-CUcGGGCaCACg -3' miRNA: 3'- gAGUCUGGUAuuCCuGAaCCCG-GUGg -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 11703 | 0.7 | 0.789907 |
Target: 5'- gUCGGacgucGCCAUGAGGA---GGGCCGuCCa -3' miRNA: 3'- gAGUC-----UGGUAUUCCUgaaCCCGGU-GG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 74867 | 0.7 | 0.780272 |
Target: 5'- gCUCGGACC-UGGGGucccuCUacgGGGCCcugGCCg -3' miRNA: 3'- -GAGUCUGGuAUUCCu----GAa--CCCGG---UGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 80580 | 0.7 | 0.780272 |
Target: 5'- uCUCAGgaugggagcaGCCAggGGGGGCaUGGGCCaagucACCa -3' miRNA: 3'- -GAGUC----------UGGUa-UUCCUGaACCCGG-----UGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 50246 | 0.71 | 0.760575 |
Target: 5'- aCUCuGACCAagcagagucGGGCgucgaGGGCCACCu -3' miRNA: 3'- -GAGuCUGGUauu------CCUGaa---CCCGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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