miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27079 5' -60 NC_005832.1 + 5766 0.72 0.330766
Target:  5'- cGAGGUGucuGGUggaCGGGgaUCCCGUGGCCCu -3'
miRNA:   3'- -CUUCAC---CCAa--GUCCa-GGGGCGCCGGG- -5'
27079 5' -60 NC_005832.1 + 19943 0.66 0.682962
Target:  5'- -uGG-GGGUggAGGUCCUCGgGGCa- -3'
miRNA:   3'- cuUCaCCCAagUCCAGGGGCgCCGgg -5'
27079 5' -60 NC_005832.1 + 43790 0.66 0.652599
Target:  5'- aGAGGcUGGGUUUcgacgagauGG-CCCaCGgGGCCCu -3'
miRNA:   3'- -CUUC-ACCCAAGu--------CCaGGG-GCgCCGGG- -5'
27079 5' -60 NC_005832.1 + 72649 0.66 0.642434
Target:  5'- ---aUGGGcccgCGGGg-CCCGaCGGCCCa -3'
miRNA:   3'- cuucACCCaa--GUCCagGGGC-GCCGGG- -5'
27079 5' -60 NC_005832.1 + 31274 0.67 0.618022
Target:  5'- gGAGGUGGGguggaugcaagaCAGGgcaagggcggCCgUGUGGCCCg -3'
miRNA:   3'- -CUUCACCCaa----------GUCCa---------GGgGCGCCGGG- -5'
27079 5' -60 NC_005832.1 + 7097 0.67 0.601774
Target:  5'- -----aGGUcUCAGGUCCCCGgCGGUgaCCa -3'
miRNA:   3'- cuucacCCA-AGUCCAGGGGC-GCCG--GG- -5'
27079 5' -60 NC_005832.1 + 65476 0.67 0.581547
Target:  5'- aGAGG-GGGcccUCAcGUCCCCGUGGUguCCa -3'
miRNA:   3'- -CUUCaCCCa--AGUcCAGGGGCGCCG--GG- -5'
27079 5' -60 NC_005832.1 + 70989 0.67 0.571485
Target:  5'- aGAGUacGGca-GGGUCCCCGUuaGGCCCc -3'
miRNA:   3'- cUUCAc-CCaagUCCAGGGGCG--CCGGG- -5'
27079 5' -60 NC_005832.1 + 104857 0.68 0.565467
Target:  5'- ----aGGGUUCAGGUagagugucccaaaacCCCCGUGGaguggaacacCCCu -3'
miRNA:   3'- cuucaCCCAAGUCCA---------------GGGGCGCC----------GGG- -5'
27079 5' -60 NC_005832.1 + 7267 0.68 0.561464
Target:  5'- gGGAGaGGGUggcaAGGUCCUaCGCGGCg- -3'
miRNA:   3'- -CUUCaCCCAag--UCCAGGG-GCGCCGgg -5'
27079 5' -60 NC_005832.1 + 80832 0.71 0.385783
Target:  5'- cAGG-GGGUcgCGGuGUcCCCCGgGGCCCu -3'
miRNA:   3'- cUUCaCCCAa-GUC-CA-GGGGCgCCGGG- -5'
27079 5' -60 NC_005832.1 + 94121 0.71 0.394121
Target:  5'- uAGG-GGGUUCugcuuggccacGGUCUCUGCGGCCUu -3'
miRNA:   3'- cUUCaCCCAAGu----------CCAGGGGCGCCGGG- -5'
27079 5' -60 NC_005832.1 + 48094 0.7 0.446512
Target:  5'- cAAGUGGGa--AGGUCCCUGaGGCUg -3'
miRNA:   3'- cUUCACCCaagUCCAGGGGCgCCGGg -5'
27079 5' -60 NC_005832.1 + 26455 0.69 0.474121
Target:  5'- ---cUGGGgagugUCGGGcagccaCCCgGCGGCCCu -3'
miRNA:   3'- cuucACCCa----AGUCCa-----GGGgCGCCGGG- -5'
27079 5' -60 NC_005832.1 + 56075 0.68 0.512205
Target:  5'- aAAGgGaGGUgCAGaGUCCCCGgcacCGGCCCa -3'
miRNA:   3'- cUUCaC-CCAaGUC-CAGGGGC----GCCGGG- -5'
27079 5' -60 NC_005832.1 + 72738 0.68 0.541575
Target:  5'- ---uUGGGcaagaCGGGUCCCaGgGGCCCa -3'
miRNA:   3'- cuucACCCaa---GUCCAGGGgCgCCGGG- -5'
27079 5' -60 NC_005832.1 + 104140 0.66 0.67893
Target:  5'- cAGGUGGGcaCAGGccauguugucuacCCCCacggcguccgcgGCGGCCCu -3'
miRNA:   3'- cUUCACCCaaGUCCa------------GGGG------------CGCCGGG- -5'
27079 5' -60 NC_005832.1 + 72780 0.76 0.19633
Target:  5'- ---uUGGGccgUCGGG-CCCCGCGGgCCCa -3'
miRNA:   3'- cuucACCCa--AGUCCaGGGGCGCC-GGG- -5'
27079 5' -60 NC_005832.1 + 32505 0.7 0.411142
Target:  5'- --cGUGGGUcUUAGGUgCUUgGCGGCCUg -3'
miRNA:   3'- cuuCACCCA-AGUCCA-GGGgCGCCGGG- -5'
27079 5' -60 NC_005832.1 + 67211 0.7 0.43127
Target:  5'- cGGAGUggccuccagggccucGGcGUcCAGGUCaggccucuuuacgCCCGCGGCCCu -3'
miRNA:   3'- -CUUCA---------------CC-CAaGUCCAG-------------GGGCGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.