Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2708 | 3' | -46.6 | NC_001491.2 | + | 13153 | 0.67 | 0.999589 |
Target: 5'- -cUGuUGCCGGGgcGUCGUGgaagUAGCc -3' miRNA: 3'- auAC-ACGGCCCauUGGCAUaaa-AUCG- -5' |
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2708 | 3' | -46.6 | NC_001491.2 | + | 23860 | 0.68 | 0.998516 |
Target: 5'- aUGUGUGCUagGGGUuuCCGUAa---AGCu -3' miRNA: 3'- -AUACACGG--CCCAuuGGCAUaaaaUCG- -5' |
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2708 | 3' | -46.6 | NC_001491.2 | + | 26440 | 0.68 | 0.999338 |
Target: 5'- cGUGUuucacaaGCCGGuuggaGUAugCGUAUUUUAGg -3' miRNA: 3'- aUACA-------CGGCC-----CAUugGCAUAAAAUCg -5' |
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2708 | 3' | -46.6 | NC_001491.2 | + | 87890 | 0.67 | 0.999746 |
Target: 5'- --gGUGuuGGGUuuuAACUGUuuaUUGGCg -3' miRNA: 3'- auaCACggCCCA---UUGGCAuaaAAUCG- -5' |
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2708 | 3' | -46.6 | NC_001491.2 | + | 120689 | 1.13 | 0.013065 |
Target: 5'- gUAUGUGCCGGGUAACCGUAUUUUAGCg -3' miRNA: 3'- -AUACACGGCCCAUUGGCAUAAAAUCG- -5' |
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2708 | 3' | -46.6 | NC_001491.2 | + | 121398 | 0.66 | 0.999912 |
Target: 5'- cAUGgcuggGCCGGGgucGCCGgagcugGGCu -3' miRNA: 3'- aUACa----CGGCCCau-UGGCauaaaaUCG- -5' |
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2708 | 3' | -46.6 | NC_001491.2 | + | 142496 | 0.69 | 0.997402 |
Target: 5'- gUAUGgGCCGGGUcACgGUAcccacuagUUGGCa -3' miRNA: 3'- -AUACaCGGCCCAuUGgCAUaa------AAUCG- -5' |
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2708 | 3' | -46.6 | NC_001491.2 | + | 144498 | 0.68 | 0.999008 |
Target: 5'- ---uUGgCGGGUGGCCGg----UGGCg -3' miRNA: 3'- auacACgGCCCAUUGGCauaaaAUCG- -5' |
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2708 | 3' | -46.6 | NC_001491.2 | + | 144893 | 0.74 | 0.958084 |
Target: 5'- --gGUGCCGGGgacGCCGgcUg--GGCg -3' miRNA: 3'- auaCACGGCCCau-UGGCauAaaaUCG- -5' |
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2708 | 3' | -46.6 | NC_001491.2 | + | 144991 | 0.66 | 0.999883 |
Target: 5'- ----cGCCGGGUGAugaggagcCCGUGgcccGGCg -3' miRNA: 3'- auacaCGGCCCAUU--------GGCAUaaaaUCG- -5' |
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2708 | 3' | -46.6 | NC_001491.2 | + | 146377 | 0.75 | 0.929344 |
Target: 5'- -cUGgGCCGGGUAGCCGgccac-GGCg -3' miRNA: 3'- auACaCGGCCCAUUGGCauaaaaUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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