Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27083 | 3' | -55.8 | NC_005832.1 | + | 6692 | 0.68 | 0.731387 |
Target: 5'- aGGAGAUaGAcgGGGGCAggaggagCCUCC-CCCa -3' miRNA: 3'- gUCUCUAcCU--CUCCGUa------GGAGGuGGG- -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 36170 | 0.68 | 0.731387 |
Target: 5'- uGGGGAUGGuuGAGGgGUCagagUCgGCCCu -3' miRNA: 3'- gUCUCUACCu-CUCCgUAGg---AGgUGGG- -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 75931 | 0.68 | 0.721259 |
Target: 5'- aGGAGAggGGAGAGGCA-CCggaCCuaaCCg -3' miRNA: 3'- gUCUCUa-CCUCUCCGUaGGa--GGug-GG- -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 43001 | 0.68 | 0.711051 |
Target: 5'- uCAGGGGUaaaaacaucaGGAuGAGGCAg-CUCCACUCu -3' miRNA: 3'- -GUCUCUA----------CCU-CUCCGUagGAGGUGGG- -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 43703 | 0.68 | 0.711051 |
Target: 5'- uCAGAGGcgGGAGGgucGGCGUacUCUCCGuCCCc -3' miRNA: 3'- -GUCUCUa-CCUCU---CCGUA--GGAGGU-GGG- -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 32336 | 0.69 | 0.690432 |
Target: 5'- cCGGGGcUGGAGGGGgAUCCuugugggcUCCggACCCc -3' miRNA: 3'- -GUCUCuACCUCUCCgUAGG--------AGG--UGGG- -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 68054 | 0.69 | 0.690432 |
Target: 5'- aGGAGAggGGcGGAGGCAUCCUgauaCACgCu -3' miRNA: 3'- gUCUCUa-CC-UCUCCGUAGGAg---GUGgG- -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 10192 | 0.69 | 0.680041 |
Target: 5'- aAGGcGGUGGAGAGG-AUCCucaugacuUCCGCCg -3' miRNA: 3'- gUCU-CUACCUCUCCgUAGG--------AGGUGGg -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 12794 | 0.69 | 0.680041 |
Target: 5'- uCAGAGucuAUGGucauuGGGGCGUCCgCUauGCCCa -3' miRNA: 3'- -GUCUC---UACCu----CUCCGUAGGaGG--UGGG- -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 66387 | 0.69 | 0.659145 |
Target: 5'- aGGGGAUGGGGGcuGGCggCCUCC-CUg -3' miRNA: 3'- gUCUCUACCUCU--CCGuaGGAGGuGGg -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 55740 | 0.7 | 0.62765 |
Target: 5'- gGGAGcgGGAGuggcugGGGCGgcgcugaccgCCUCUGCCCu -3' miRNA: 3'- gUCUCuaCCUC------UCCGUa---------GGAGGUGGG- -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 20077 | 0.7 | 0.617148 |
Target: 5'- uGGAGAUGcccgcGAGGa--CCUCCACCCc -3' miRNA: 3'- gUCUCUACcu---CUCCguaGGAGGUGGG- -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 13628 | 0.71 | 0.575336 |
Target: 5'- uCAGAGAgcaagGGAGAGGCGgcgugCagggaggCCGCCUa -3' miRNA: 3'- -GUCUCUa----CCUCUCCGUa----Gga-----GGUGGG- -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 24708 | 0.71 | 0.564972 |
Target: 5'- aGGAGAgccaUGGAGAucaucGCAUaCCUCCAgCCCa -3' miRNA: 3'- gUCUCU----ACCUCUc----CGUA-GGAGGU-GGG- -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 9045 | 0.71 | 0.564972 |
Target: 5'- uCAGAGGacucgUGGAGGGG-AUCCugcUCCGCCa -3' miRNA: 3'- -GUCUCU-----ACCUCUCCgUAGG---AGGUGGg -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 27343 | 0.71 | 0.554656 |
Target: 5'- gGGGGAcGGAGuGGCGUCCUaCUuuuuCCCc -3' miRNA: 3'- gUCUCUaCCUCuCCGUAGGA-GGu---GGG- -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 19745 | 0.72 | 0.5342 |
Target: 5'- cCAGGGGcuuugGGGGAGGCAggUUCCcCCCg -3' miRNA: 3'- -GUCUCUa----CCUCUCCGUagGAGGuGGG- -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 56376 | 0.72 | 0.5342 |
Target: 5'- aCAGAGGccaGGAGGGGUccuauggcCCUCCugCCg -3' miRNA: 3'- -GUCUCUa--CCUCUCCGua------GGAGGugGG- -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 43408 | 0.73 | 0.446133 |
Target: 5'- cCAGAGG-GGAuuagGGGGUccagauacgacaAUCCUCCGCCCc -3' miRNA: 3'- -GUCUCUaCCU----CUCCG------------UAGGAGGUGGG- -5' |
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27083 | 3' | -55.8 | NC_005832.1 | + | 19943 | 0.75 | 0.365939 |
Target: 5'- uGGGGGUGGAGguccucgGGGCAUC-UCCAgCCCg -3' miRNA: 3'- gUCUCUACCUC-------UCCGUAGgAGGU-GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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