miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27084 3' -62.4 NC_005832.1 + 13455 0.66 0.516335
Target:  5'- -gUGCCCcugucccagauGGCCGGCaagaccaUCGCCGUGGAc -3'
miRNA:   3'- gaACGGG-----------UCGGCCGgc-----GGUGGCACUU- -5'
27084 3' -62.4 NC_005832.1 + 16357 0.66 0.468673
Target:  5'- --cGCCUccuG-CGGCCGCCGCgGUGGc -3'
miRNA:   3'- gaaCGGGu--CgGCCGGCGGUGgCACUu -5'
27084 3' -62.4 NC_005832.1 + 2271 0.66 0.468673
Target:  5'- uCUUGCCCGguggcguuGCUGGCCGUCuccaacGCCGUcaGGAc -3'
miRNA:   3'- -GAACGGGU--------CGGCCGGCGG------UGGCA--CUU- -5'
27084 3' -62.4 NC_005832.1 + 14165 0.67 0.432221
Target:  5'- uCUUGgCCGGUuugaCGGCUGCCAUCG-GGAc -3'
miRNA:   3'- -GAACgGGUCG----GCCGGCGGUGGCaCUU- -5'
27084 3' -62.4 NC_005832.1 + 103977 0.67 0.423369
Target:  5'- --gGCCCuGagGGCCGCCgcggacGCCGUGGGg -3'
miRNA:   3'- gaaCGGGuCggCCGGCGG------UGGCACUU- -5'
27084 3' -62.4 NC_005832.1 + 37952 0.67 0.414626
Target:  5'- -gUGCCagGGCCGuaccccaUCGCCACCGUGGGa -3'
miRNA:   3'- gaACGGg-UCGGCc------GGCGGUGGCACUU- -5'
27084 3' -62.4 NC_005832.1 + 67160 0.67 0.405996
Target:  5'- --gGCCCucGCCacGGCCGCCGCCa---- -3'
miRNA:   3'- gaaCGGGu-CGG--CCGGCGGUGGcacuu -5'
27084 3' -62.4 NC_005832.1 + 78586 0.67 0.405996
Target:  5'- --aGCCUgacGUCGGUCGCCGCCGccuuUGAGg -3'
miRNA:   3'- gaaCGGGu--CGGCCGGCGGUGGC----ACUU- -5'
27084 3' -62.4 NC_005832.1 + 10039 0.68 0.379971
Target:  5'- -cUGCCCGcuucgucgggcgcGUCGGCCGCggagGCCGUGGc -3'
miRNA:   3'- gaACGGGU-------------CGGCCGGCGg---UGGCACUu -5'
27084 3' -62.4 NC_005832.1 + 1120 0.68 0.364582
Target:  5'- --gGCCCAGCCGGC-GUC-CCGcGAGg -3'
miRNA:   3'- gaaCGGGUCGGCCGgCGGuGGCaCUU- -5'
27084 3' -62.4 NC_005832.1 + 47583 0.69 0.333617
Target:  5'- cCUUGgCCGGCCucgcGGCCGCCAugcCCGUc-- -3'
miRNA:   3'- -GAACgGGUCGG----CCGGCGGU---GGCAcuu -5'
27084 3' -62.4 NC_005832.1 + 44661 0.71 0.25253
Target:  5'- uCUUGCCCAGCUuGCaCGCCGCgGUcccGAAg -3'
miRNA:   3'- -GAACGGGUCGGcCG-GCGGUGgCA---CUU- -5'
27084 3' -62.4 NC_005832.1 + 97107 0.72 0.218448
Target:  5'- --cGCCCuggAGCaGGCCGCCGCgGUGGc -3'
miRNA:   3'- gaaCGGG---UCGgCCGGCGGUGgCACUu -5'
27084 3' -62.4 NC_005832.1 + 96382 0.78 0.080233
Target:  5'- --cGCCCuGUCGGCCGCCaucuccaacACCGUGAGa -3'
miRNA:   3'- gaaCGGGuCGGCCGGCGG---------UGGCACUU- -5'
27084 3' -62.4 NC_005832.1 + 56394 1.06 0.000711
Target:  5'- cCUUGCCCAGCCGGCCGCCACCGUGAAg -3'
miRNA:   3'- -GAACGGGUCGGCCGGCGGUGGCACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.