miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27084 5' -56.3 NC_005832.1 + 9904 0.66 0.820452
Target:  5'- ---cCGCGGCCgacgcgcccgacgaaGCGGgcaggGGaCCGGGCUCc -3'
miRNA:   3'- gaaaGUGUCGG---------------CGCCa----CC-GGUUCGAG- -5'
27084 5' -56.3 NC_005832.1 + 95686 0.66 0.816885
Target:  5'- ----aGCGGCCGCGGaGGCU-AGCcCg -3'
miRNA:   3'- gaaagUGUCGGCGCCaCCGGuUCGaG- -5'
27084 5' -56.3 NC_005832.1 + 4690 0.66 0.816885
Target:  5'- aCUUcCACGaCCGaGGUGGCCAGGauCUCc -3'
miRNA:   3'- -GAAaGUGUcGGCgCCACCGGUUC--GAG- -5'
27084 5' -56.3 NC_005832.1 + 70737 0.66 0.816885
Target:  5'- ---cCGCAGCCGCGGcuauaGCCAgAGC-Ca -3'
miRNA:   3'- gaaaGUGUCGGCGCCac---CGGU-UCGaG- -5'
27084 5' -56.3 NC_005832.1 + 47712 0.66 0.807842
Target:  5'- --aUgGCGGCCGCGaGgccGGCCAAGg-- -3'
miRNA:   3'- gaaAgUGUCGGCGC-Ca--CCGGUUCgag -5'
27084 5' -56.3 NC_005832.1 + 95938 0.66 0.807842
Target:  5'- ----aGCGGCCGCGGccagGGCagCAAGCcCg -3'
miRNA:   3'- gaaagUGUCGGCGCCa---CCG--GUUCGaG- -5'
27084 5' -56.3 NC_005832.1 + 5203 0.66 0.807842
Target:  5'- ---gCACGacgaccccGCCGUcgagggucuGGUGGCCcAGCUCa -3'
miRNA:   3'- gaaaGUGU--------CGGCG---------CCACCGGuUCGAG- -5'
27084 5' -56.3 NC_005832.1 + 94020 0.66 0.798628
Target:  5'- --aUgGCGGUCGCGGUGGCgAuuuGGUa- -3'
miRNA:   3'- gaaAgUGUCGGCGCCACCGgU---UCGag -5'
27084 5' -56.3 NC_005832.1 + 61934 0.66 0.789253
Target:  5'- --gUUugGGuuGUGGUGGCCGucgggguuAGuCUCg -3'
miRNA:   3'- gaaAGugUCggCGCCACCGGU--------UC-GAG- -5'
27084 5' -56.3 NC_005832.1 + 97245 0.66 0.779726
Target:  5'- --cUCAgGGCCaccGCGGcGGCCu-GCUCc -3'
miRNA:   3'- gaaAGUgUCGG---CGCCaCCGGuuCGAG- -5'
27084 5' -56.3 NC_005832.1 + 90300 0.66 0.779726
Target:  5'- aCUUUaAgGGUC-CaGUGGCCAAGCUCu -3'
miRNA:   3'- -GAAAgUgUCGGcGcCACCGGUUCGAG- -5'
27084 5' -56.3 NC_005832.1 + 97582 0.66 0.779726
Target:  5'- --aUgGCGGCCGCGGcauCCcAGCUCa -3'
miRNA:   3'- gaaAgUGUCGGCGCCaccGGuUCGAG- -5'
27084 5' -56.3 NC_005832.1 + 91444 0.67 0.760257
Target:  5'- ---aCuCGGCCGUcaUGGCCAAGCUg -3'
miRNA:   3'- gaaaGuGUCGGCGccACCGGUUCGAg -5'
27084 5' -56.3 NC_005832.1 + 67036 0.67 0.760257
Target:  5'- ----gGCGGCCGUGGcgagGGCCGcgGGCg- -3'
miRNA:   3'- gaaagUGUCGGCGCCa---CCGGU--UCGag -5'
27084 5' -56.3 NC_005832.1 + 41741 0.68 0.709635
Target:  5'- -gUUCcCGGCCaUGGUGGCCAGGg-- -3'
miRNA:   3'- gaAAGuGUCGGcGCCACCGGUUCgag -5'
27084 5' -56.3 NC_005832.1 + 37556 0.68 0.709635
Target:  5'- ---aCAUAGCCGgGGUGGgCGAGg-- -3'
miRNA:   3'- gaaaGUGUCGGCgCCACCgGUUCgag -5'
27084 5' -56.3 NC_005832.1 + 70853 0.68 0.688822
Target:  5'- ---cCGCGGCUGCGGcGGCCu--CUCu -3'
miRNA:   3'- gaaaGUGUCGGCGCCaCCGGuucGAG- -5'
27084 5' -56.3 NC_005832.1 + 31807 0.68 0.678334
Target:  5'- ---cCACGGCCGUGGUGauCUggGCUa -3'
miRNA:   3'- gaaaGUGUCGGCGCCACc-GGuuCGAg -5'
27084 5' -56.3 NC_005832.1 + 56261 0.7 0.572741
Target:  5'- -cUUCACGGUgGCGGccGGCUggGCa- -3'
miRNA:   3'- gaAAGUGUCGgCGCCa-CCGGuuCGag -5'
27084 5' -56.3 NC_005832.1 + 6247 0.7 0.569604
Target:  5'- --cUCGCAGCCGCGaaccuccaugaggcaGGCCGcgAGCUCc -3'
miRNA:   3'- gaaAGUGUCGGCGCca-------------CCGGU--UCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.