Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27084 | 5' | -56.3 | NC_005832.1 | + | 4690 | 0.66 | 0.816885 |
Target: 5'- aCUUcCACGaCCGaGGUGGCCAGGauCUCc -3' miRNA: 3'- -GAAaGUGUcGGCgCCACCGGUUC--GAG- -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 5203 | 0.66 | 0.807842 |
Target: 5'- ---gCACGacgaccccGCCGUcgagggucuGGUGGCCcAGCUCa -3' miRNA: 3'- gaaaGUGU--------CGGCG---------CCACCGGuUCGAG- -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 6247 | 0.7 | 0.569604 |
Target: 5'- --cUCGCAGCCGCGaaccuccaugaggcaGGCCGcgAGCUCc -3' miRNA: 3'- gaaAGUGUCGGCGCca-------------CCGGU--UCGAG- -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 9904 | 0.66 | 0.820452 |
Target: 5'- ---cCGCGGCCgacgcgcccgacgaaGCGGgcaggGGaCCGGGCUCc -3' miRNA: 3'- gaaaGUGUCGG---------------CGCCa----CC-GGUUCGAG- -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 10021 | 0.74 | 0.338909 |
Target: 5'- ---gCGuCGGCCGCGGaGGCCGuGGCUCa -3' miRNA: 3'- gaaaGU-GUCGGCGCCaCCGGU-UCGAG- -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 16367 | 0.72 | 0.442759 |
Target: 5'- ----gGCcGCCGCGGUGGCCucAGCg- -3' miRNA: 3'- gaaagUGuCGGCGCCACCGGu-UCGag -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 31807 | 0.68 | 0.678334 |
Target: 5'- ---cCACGGCCGUGGUGauCUggGCUa -3' miRNA: 3'- gaaaGUGUCGGCGCCACc-GGuuCGAg -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 37556 | 0.68 | 0.709635 |
Target: 5'- ---aCAUAGCCGgGGUGGgCGAGg-- -3' miRNA: 3'- gaaaGUGUCGGCgCCACCgGUUCgag -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 41741 | 0.68 | 0.709635 |
Target: 5'- -gUUCcCGGCCaUGGUGGCCAGGg-- -3' miRNA: 3'- gaAAGuGUCGGcGCCACCGGUUCgag -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 43283 | 0.72 | 0.43343 |
Target: 5'- cCUUUCcCAGCCuGaCGGUGGCCA-GCa- -3' miRNA: 3'- -GAAAGuGUCGG-C-GCCACCGGUuCGag -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 47712 | 0.66 | 0.807842 |
Target: 5'- --aUgGCGGCCGCGaGgccGGCCAAGg-- -3' miRNA: 3'- gaaAgUGUCGGCGC-Ca--CCGGUUCgag -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 56261 | 0.7 | 0.572741 |
Target: 5'- -cUUCACGGUgGCGGccGGCUggGCa- -3' miRNA: 3'- gaAAGUGUCGgCGCCa-CCGGuuCGag -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 56360 | 1.11 | 0.00116 |
Target: 5'- aCUUUCACAGCCGCGGUGGCCAAGCUCa -3' miRNA: 3'- -GAAAGUGUCGGCGCCACCGGUUCGAG- -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 61934 | 0.66 | 0.789253 |
Target: 5'- --gUUugGGuuGUGGUGGCCGucgggguuAGuCUCg -3' miRNA: 3'- gaaAGugUCggCGCCACCGGU--------UC-GAG- -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 67036 | 0.67 | 0.760257 |
Target: 5'- ----gGCGGCCGUGGcgagGGCCGcgGGCg- -3' miRNA: 3'- gaaagUGUCGGCGCCa---CCGGU--UCGag -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 70737 | 0.66 | 0.816885 |
Target: 5'- ---cCGCAGCCGCGGcuauaGCCAgAGC-Ca -3' miRNA: 3'- gaaaGUGUCGGCGCCac---CGGU-UCGaG- -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 70853 | 0.68 | 0.688822 |
Target: 5'- ---cCGCGGCUGCGGcGGCCu--CUCu -3' miRNA: 3'- gaaaGUGUCGGCGCCaCCGGuucGAG- -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 90300 | 0.66 | 0.779726 |
Target: 5'- aCUUUaAgGGUC-CaGUGGCCAAGCUCu -3' miRNA: 3'- -GAAAgUgUCGGcGcCACCGGUUCGAG- -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 91444 | 0.67 | 0.760257 |
Target: 5'- ---aCuCGGCCGUcaUGGCCAAGCUg -3' miRNA: 3'- gaaaGuGUCGGCGccACCGGUUCGAg -5' |
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27084 | 5' | -56.3 | NC_005832.1 | + | 91979 | 0.73 | 0.388564 |
Target: 5'- -aUUCAC-GCUGCGGUGGCgAGGUg- -3' miRNA: 3'- gaAAGUGuCGGCGCCACCGgUUCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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