miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27085 3' -55.9 NC_005832.1 + 84690 0.66 0.860544
Target:  5'- gGACCAgGGCUAGGGACGag--G-CCa -3'
miRNA:   3'- aCUGGU-CCGGUCCCUGUaacaCaGGg -5'
27085 3' -55.9 NC_005832.1 + 48426 0.66 0.860544
Target:  5'- gUGACCAgGGCCcugcaggacuuuAGGGACGUgaggGUCg- -3'
miRNA:   3'- -ACUGGU-CCGG------------UCCCUGUAaca-CAGgg -5'
27085 3' -55.9 NC_005832.1 + 32428 0.66 0.852596
Target:  5'- -cACgGGGaCCcuGGACAgcgaGUGUCCCg -3'
miRNA:   3'- acUGgUCC-GGucCCUGUaa--CACAGGG- -5'
27085 3' -55.9 NC_005832.1 + 42893 0.66 0.851789
Target:  5'- aGGCUcGGCCccccuucuuauggAGGGuCggUGUGUCUCa -3'
miRNA:   3'- aCUGGuCCGG-------------UCCCuGuaACACAGGG- -5'
27085 3' -55.9 NC_005832.1 + 35986 0.66 0.844437
Target:  5'- cUGAagcGGCCcGGGGCGUUGUaGUgCCu -3'
miRNA:   3'- -ACUgguCCGGuCCCUGUAACA-CAgGG- -5'
27085 3' -55.9 NC_005832.1 + 79018 0.66 0.844437
Target:  5'- aGGuCCAGGCuCAGGGACucUGccaCCCu -3'
miRNA:   3'- aCU-GGUCCG-GUCCCUGuaACacaGGG- -5'
27085 3' -55.9 NC_005832.1 + 51070 0.66 0.836077
Target:  5'- aGA-CGGGCCauAGGGAguCAUgg-GUCCCg -3'
miRNA:   3'- aCUgGUCCGG--UCCCU--GUAacaCAGGG- -5'
27085 3' -55.9 NC_005832.1 + 78244 0.66 0.830966
Target:  5'- aGGCCAGGaaccugggagagcuaCCGGGaGACAgg--GUCCUg -3'
miRNA:   3'- aCUGGUCC---------------GGUCC-CUGUaacaCAGGG- -5'
27085 3' -55.9 NC_005832.1 + 6520 0.66 0.824917
Target:  5'- gUGGCCcugugcgGGGCCAGGGACAgggggcaggcgGUGacgugCgCCg -3'
miRNA:   3'- -ACUGG-------UCCGGUCCCUGUaa---------CACa----G-GG- -5'
27085 3' -55.9 NC_005832.1 + 19733 0.66 0.818777
Target:  5'- gGACCgucAGGcCCAGGGGCuUUGggggaggcagGUUCCc -3'
miRNA:   3'- aCUGG---UCC-GGUCCCUGuAACa---------CAGGG- -5'
27085 3' -55.9 NC_005832.1 + 65312 0.66 0.818777
Target:  5'- gGACCAuGGUCAGGGcGCAgc-UGgaggCCCu -3'
miRNA:   3'- aCUGGU-CCGGUCCC-UGUaacACa---GGG- -5'
27085 3' -55.9 NC_005832.1 + 31447 0.67 0.809856
Target:  5'- gGGCaCAGGCgGGGGACGauccagGaGUCCa -3'
miRNA:   3'- aCUG-GUCCGgUCCCUGUaa----CaCAGGg -5'
27085 3' -55.9 NC_005832.1 + 618 0.67 0.809856
Target:  5'- cGGCCAGGCCGGGaGACucgccgaacaUGgacacaaacugGUCCa -3'
miRNA:   3'- aCUGGUCCGGUCC-CUGua--------ACa----------CAGGg -5'
27085 3' -55.9 NC_005832.1 + 89560 0.67 0.791512
Target:  5'- gGuACCAGGCCAGGGGgGccGUcagCCUg -3'
miRNA:   3'- aC-UGGUCCGGUCCCUgUaaCAca-GGG- -5'
27085 3' -55.9 NC_005832.1 + 81932 0.67 0.791512
Target:  5'- aGACCAGagaAGGGugGagGUGUUCCu -3'
miRNA:   3'- aCUGGUCcggUCCCugUaaCACAGGG- -5'
27085 3' -55.9 NC_005832.1 + 29892 0.67 0.791512
Target:  5'- uUGACCAGGCauggcuUAGGGGCcgaaccUCCCa -3'
miRNA:   3'- -ACUGGUCCG------GUCCCUGuaacacAGGG- -5'
27085 3' -55.9 NC_005832.1 + 14133 0.67 0.78211
Target:  5'- aGAaacCCAGG-CAGaGGACAacGUGUCCUc -3'
miRNA:   3'- aCU---GGUCCgGUC-CCUGUaaCACAGGG- -5'
27085 3' -55.9 NC_005832.1 + 36217 0.67 0.78211
Target:  5'- -cGCCAGcGCCAGGG-CGgucGUGguccagCCCa -3'
miRNA:   3'- acUGGUC-CGGUCCCuGUaa-CACa-----GGG- -5'
27085 3' -55.9 NC_005832.1 + 38581 0.67 0.772565
Target:  5'- gGACCuGGCUAGcccGGGCAggGUGgagcaguccaucUCCCu -3'
miRNA:   3'- aCUGGuCCGGUC---CCUGUaaCAC------------AGGG- -5'
27085 3' -55.9 NC_005832.1 + 47965 0.67 0.762888
Target:  5'- gUGACCucGGGCUgAGGGACGUcGgg-CCCc -3'
miRNA:   3'- -ACUGG--UCCGG-UCCCUGUAaCacaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.