miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27085 5' -62.4 NC_005832.1 + 95942 0.66 0.489003
Target:  5'- -aGGGAGcgGCCGcGGCCa-GGGCa- -3'
miRNA:   3'- ucCCCUCuaCGGUuCCGGagCCCGga -5'
27085 5' -62.4 NC_005832.1 + 39590 0.66 0.489003
Target:  5'- cAGGGGAccUGCaggaGAGGCCggauUCGuGGCCc -3'
miRNA:   3'- -UCCCCUcuACGg---UUCCGG----AGC-CCGGa -5'
27085 5' -62.4 NC_005832.1 + 17027 0.66 0.479578
Target:  5'- uAGGGGAGGgagacaacUGgCAGGGCCa--GGCCg -3'
miRNA:   3'- -UCCCCUCU--------ACgGUUCCGGagcCCGGa -5'
27085 5' -62.4 NC_005832.1 + 65599 0.66 0.476768
Target:  5'- gGGGGGAGAUucGUCAAGacccCCUCGgcagauucccugccGGCCUg -3'
miRNA:   3'- -UCCCCUCUA--CGGUUCc---GGAGC--------------CCGGA- -5'
27085 5' -62.4 NC_005832.1 + 5700 0.66 0.470243
Target:  5'- cGGGGGAGAcggUGaCC-AGGCCgccuccguuuUCGuGGCCc -3'
miRNA:   3'- -UCCCCUCU---AC-GGuUCCGG----------AGC-CCGGa -5'
27085 5' -62.4 NC_005832.1 + 72826 0.67 0.442812
Target:  5'- uGGGGuaccAGGUcaaCAGGGUCUgGGGCCUg -3'
miRNA:   3'- uCCCC----UCUAcg-GUUCCGGAgCCCGGA- -5'
27085 5' -62.4 NC_005832.1 + 56143 0.67 0.439223
Target:  5'- cGGGGGcaAGAc-CCAGGGCCgcguacggcuacgCGGGCCc -3'
miRNA:   3'- -UCCCC--UCUacGGUUCCGGa------------GCCCGGa -5'
27085 5' -62.4 NC_005832.1 + 79688 0.67 0.43387
Target:  5'- uGGGGAGcagguugGCCcuGAGGCC-CGGGUa- -3'
miRNA:   3'- uCCCCUCua-----CGG--UUCCGGaGCCCGga -5'
27085 5' -62.4 NC_005832.1 + 53912 0.67 0.416307
Target:  5'- aAGGGGuccUGaagGAGGCCUgGGGCCa -3'
miRNA:   3'- -UCCCCucuACgg-UUCCGGAgCCCGGa -5'
27085 5' -62.4 NC_005832.1 + 962 0.67 0.416307
Target:  5'- uGGGGGAGcagacGUGC----GCCUCGGGCUUc -3'
miRNA:   3'- -UCCCCUC-----UACGguucCGGAGCCCGGA- -5'
27085 5' -62.4 NC_005832.1 + 79885 0.68 0.399186
Target:  5'- gAGGaGAGGgcgGCCAuGGCCUCGGaCCc -3'
miRNA:   3'- -UCCcCUCUa--CGGUuCCGGAGCCcGGa -5'
27085 5' -62.4 NC_005832.1 + 35307 0.68 0.399185
Target:  5'- gAGGGaGGGAUGCCcgugacuGGCUUCcacgucggaGGGCCc -3'
miRNA:   3'- -UCCC-CUCUACGGuu-----CCGGAG---------CCCGGa -5'
27085 5' -62.4 NC_005832.1 + 97219 0.68 0.382521
Target:  5'- cAGGGcgucuGAGGUcGaCAGGGCCUCcuGGGCCUu -3'
miRNA:   3'- -UCCC-----CUCUA-CgGUUCCGGAG--CCCGGA- -5'
27085 5' -62.4 NC_005832.1 + 10954 0.69 0.36156
Target:  5'- cGGGGAGGUGCUggGAGGCaccggcaugacccacCUCaGGCUg -3'
miRNA:   3'- uCCCCUCUACGG--UUCCG---------------GAGcCCGGa -5'
27085 5' -62.4 NC_005832.1 + 36520 0.7 0.313449
Target:  5'- gAGGcGGcGuacGCCAGGGCCggGGGCCa -3'
miRNA:   3'- -UCC-CCuCua-CGGUUCCGGagCCCGGa -5'
27085 5' -62.4 NC_005832.1 + 32741 0.7 0.292623
Target:  5'- gAGGcGGuGGUGCgGucguggugcuuGGUCUCGGGCCUg -3'
miRNA:   3'- -UCC-CCuCUACGgUu----------CCGGAGCCCGGA- -5'
27085 5' -62.4 NC_005832.1 + 21074 0.71 0.242405
Target:  5'- aGGGGGAGGaggcuggugauUGCCGGGGCC-CGuagggacgccccGGCCg -3'
miRNA:   3'- -UCCCCUCU-----------ACGGUUCCGGaGC------------CCGGa -5'
27085 5' -62.4 NC_005832.1 + 11010 0.71 0.237228
Target:  5'- aGGGGGAGGgugagcuaccucaagGCCGccAGGCCcgacgCGGGUCUg -3'
miRNA:   3'- -UCCCCUCUa--------------CGGU--UCCGGa----GCCCGGA- -5'
27085 5' -62.4 NC_005832.1 + 32834 0.72 0.229913
Target:  5'- gAGGcGGugguacggucguGGUGCCu-GGUCUCGGGCCUg -3'
miRNA:   3'- -UCC-CCu-----------CUACGGuuCCGGAGCCCGGA- -5'
27085 5' -62.4 NC_005832.1 + 32927 0.72 0.229913
Target:  5'- gAGGcGGuggugcagucguGGUGCCu-GGUCUCGGGCCUg -3'
miRNA:   3'- -UCC-CCu-----------CUACGGuuCCGGAGCCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.