miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27088	5'	-53.8	NC_005832.1	+	27930	0.66	0.906989
	Target:  5'- aCGCGGUGGUcaaggggcaaaggGUCccGcCGGAGACGg -3' miRNA:   3'- -GCGUCACCGa------------CAGuaCuGUCUCUGCa -5'
27088	5'	-53.8	NC_005832.1	+	50621	0.67	0.892254
	Target:  5'- gGCggagAGUGGCUGUCugcggacauucuccUGAUAGAGGCc- -3' miRNA:   3'- gCG----UCACCGACAGu-------------ACUGUCUCUGca -5'
27088	5'	-53.8	NC_005832.1	+	98493	0.67	0.882247
	Target:  5'- gGCAGccGGUuugcuuagacaUGUCG-GACGGAGACGg -3' miRNA:   3'- gCGUCa-CCG-----------ACAGUaCUGUCUCUGCa -5'
27088	5'	-53.8	NC_005832.1	+	67275	0.68	0.816491
	Target:  5'- gGCuGUGGCUGUCGaggGACaggaaAGAGGCc- -3' miRNA:   3'- gCGuCACCGACAGUa--CUG-----UCUCUGca -5'
27088	5'	-53.8	NC_005832.1	+	80305	0.69	0.798058
	Target:  5'- -cCAGUcggauggaGGC-GUCAUGACGGGGACGc -3' miRNA:   3'- gcGUCA--------CCGaCAGUACUGUCUCUGCa -5'
27088	5'	-53.8	NC_005832.1	+	91768	0.7	0.728924
	Target:  5'- aGguGUGGgaGgcgGUGGCGGGGACGg -3' miRNA:   3'- gCguCACCgaCag-UACUGUCUCUGCa -5'
27088	5'	-53.8	NC_005832.1	+	16372	0.7	0.708193
	Target:  5'- cCGCGGUGGCc-UCAgcgGACAGGguGACGUu -3' miRNA:   3'- -GCGUCACCGacAGUa--CUGUCU--CUGCA- -5'
27088	5'	-53.8	NC_005832.1	+	39818	0.72	0.638227
	Target:  5'- aGCGG-GGCgccuggaucuuaggGUUcgGACGGAGACGUg -3' miRNA:   3'- gCGUCaCCGa-------------CAGuaCUGUCUCUGCA- -5'
27088	5'	-53.8	NC_005832.1	+	10281	0.72	0.633953
	Target:  5'- gGCuGGUGGCUGUUcccaggGGCAGGGACa- -3' miRNA:   3'- gCG-UCACCGACAGua----CUGUCUCUGca -5'
27088	5'	-53.8	NC_005832.1	+	60142	1.08	0.003278
	Target:  5'- gCGCAGUGGCUGUCAUGACAGAGACGUa -3' miRNA:   3'- -GCGUCACCGACAGUACUGUCUCUGCA- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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