miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27094 5' -60.8 NC_005832.1 + 39283 0.66 0.615675
Target:  5'- gGGcCCCGCgGGCGCAgACggaGUCCacGUCc -3'
miRNA:   3'- -CC-GGGCG-CCGCGUgUGacgUAGG--CAG- -5'
27094 5' -60.8 NC_005832.1 + 30163 0.66 0.605533
Target:  5'- aGGCuuGCGGUGCGCucccCUGCGaggUuuGg- -3'
miRNA:   3'- -CCGggCGCCGCGUGu---GACGU---AggCag -5'
27094 5' -60.8 NC_005832.1 + 64271 0.66 0.605533
Target:  5'- uGGCCgGCgacucugaggcGGCGUACuggggACUGCAcgCCGUg -3'
miRNA:   3'- -CCGGgCG-----------CCGCGUG-----UGACGUa-GGCAg -5'
27094 5' -60.8 NC_005832.1 + 42983 0.66 0.59541
Target:  5'- uGCCUGUGGCgaaGCACAUgUGCAggCUGUUg -3'
miRNA:   3'- cCGGGCGCCG---CGUGUG-ACGUa-GGCAG- -5'
27094 5' -60.8 NC_005832.1 + 34963 0.66 0.59541
Target:  5'- gGGCaCuCGUGGCaGCACACUGCcg-CGUa -3'
miRNA:   3'- -CCG-G-GCGCCG-CGUGUGACGuagGCAg -5'
27094 5' -60.8 NC_005832.1 + 29893 0.66 0.589349
Target:  5'- gGGgCgGCGGUggaggccaagaugagGCACACgGCAgCCGUCc -3'
miRNA:   3'- -CCgGgCGCCG---------------CGUGUGaCGUaGGCAG- -5'
27094 5' -60.8 NC_005832.1 + 47590 0.67 0.565227
Target:  5'- cGGCCuCGCGGC-CGCcaUGC--CCGUCa -3'
miRNA:   3'- -CCGG-GCGCCGcGUGugACGuaGGCAG- -5'
27094 5' -60.8 NC_005832.1 + 7281 0.67 0.55525
Target:  5'- aGGUCCuacgcgGCGGCGguC-CUGUGUCCGg- -3'
miRNA:   3'- -CCGGG------CGCCGCguGuGACGUAGGCag -5'
27094 5' -60.8 NC_005832.1 + 25629 0.67 0.554255
Target:  5'- aGGCCCaaGUcuuuaggguuccaGGCGCACACgaugaUGCAcCUGUCu -3'
miRNA:   3'- -CCGGG--CG-------------CCGCGUGUG-----ACGUaGGCAG- -5'
27094 5' -60.8 NC_005832.1 + 1209 0.67 0.525654
Target:  5'- uGGCgaccuCCGCGGUGCAguCUGCAaauUCCu-- -3'
miRNA:   3'- -CCG-----GGCGCCGCGUguGACGU---AGGcag -5'
27094 5' -60.8 NC_005832.1 + 40856 0.68 0.459206
Target:  5'- aGGCCCGgGG-GCAUcuuuACgGCcagGUCCGUCu -3'
miRNA:   3'- -CCGGGCgCCgCGUG----UGaCG---UAGGCAG- -5'
27094 5' -60.8 NC_005832.1 + 32081 0.69 0.432116
Target:  5'- aGGCCuCGCGGUGgGCGCccCAUCCccuGUCu -3'
miRNA:   3'- -CCGG-GCGCCGCgUGUGacGUAGG---CAG- -5'
27094 5' -60.8 NC_005832.1 + 67167 0.69 0.414583
Target:  5'- cGCCCGCGGCccucGC-CACgGCcgCCGcCa -3'
miRNA:   3'- cCGGGCGCCG----CGuGUGaCGuaGGCaG- -5'
27094 5' -60.8 NC_005832.1 + 831 0.7 0.397495
Target:  5'- aGCCCGaGGCGCACGuCUGCucccccagguUCCaGUCc -3'
miRNA:   3'- cCGGGCgCCGCGUGU-GACGu---------AGG-CAG- -5'
27094 5' -60.8 NC_005832.1 + 20720 0.7 0.397495
Target:  5'- cGCCC-UGGCGUACACggugGCuagagCCGUCc -3'
miRNA:   3'- cCGGGcGCCGCGUGUGa---CGua---GGCAG- -5'
27094 5' -60.8 NC_005832.1 + 77077 0.71 0.341373
Target:  5'- cGGCCggUGCGGcCGuCGCGCUGUAcCUGUCu -3'
miRNA:   3'- -CCGG--GCGCC-GC-GUGUGACGUaGGCAG- -5'
27094 5' -60.8 NC_005832.1 + 46686 0.72 0.277975
Target:  5'- cGCCUGCaGGCGCACACgGUcUuuGUCc -3'
miRNA:   3'- cCGGGCG-CCGCGUGUGaCGuAggCAG- -5'
27094 5' -60.8 NC_005832.1 + 20173 0.73 0.235431
Target:  5'- uGGCCCucaugaugGUGGCGCACA--GCAUCgCGUCc -3'
miRNA:   3'- -CCGGG--------CGCCGCGUGUgaCGUAG-GCAG- -5'
27094 5' -60.8 NC_005832.1 + 36646 0.74 0.208496
Target:  5'- cGGCCC-UGGCGUACGCcGCcUCCGUg -3'
miRNA:   3'- -CCGGGcGCCGCGUGUGaCGuAGGCAg -5'
27094 5' -60.8 NC_005832.1 + 68725 1.11 0.000455
Target:  5'- aGGCCCGCGGCGCACACUGCAUCCGUCa -3'
miRNA:   3'- -CCGGGCGCCGCGUGUGACGUAGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.