miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27096 3' -53.1 NC_005832.1 + 72250 1.07 0.004153
Target:  5'- gUGGUGGAAAAGGACGAAGUCGCCCUAg -3'
miRNA:   3'- -ACCACCUUUUCCUGCUUCAGCGGGAU- -5'
27096 3' -53.1 NC_005832.1 + 5427 0.79 0.30846
Target:  5'- aGGUGGAcGAGGugGggGU-GCCCg- -3'
miRNA:   3'- aCCACCUuUUCCugCuuCAgCGGGau -5'
27096 3' -53.1 NC_005832.1 + 11544 0.79 0.30846
Target:  5'- cUGGUGGccAAAGG-CGggGUCGUCCUGg -3'
miRNA:   3'- -ACCACCu-UUUCCuGCuuCAGCGGGAU- -5'
27096 3' -53.1 NC_005832.1 + 32250 0.76 0.445403
Target:  5'- gUGGU-GAGGGGGGCGAGGcugacCGCCCUAg -3'
miRNA:   3'- -ACCAcCUUUUCCUGCUUCa----GCGGGAU- -5'
27096 3' -53.1 NC_005832.1 + 60056 0.71 0.706725
Target:  5'- ---aGGAGAGGGACGuAAGUCucuGCCCUc -3'
miRNA:   3'- accaCCUUUUCCUGC-UUCAG---CGGGAu -5'
27096 3' -53.1 NC_005832.1 + 68048 0.71 0.717232
Target:  5'- aGGUGGAggaGAGGGGCGGAGgCaUCCUGa -3'
miRNA:   3'- aCCACCU---UUUCCUGCUUCaGcGGGAU- -5'
27096 3' -53.1 NC_005832.1 + 27327 0.7 0.737993
Target:  5'- aGGcucUGGAGAuuguggGGGACGGAGUggCGUCCUAc -3'
miRNA:   3'- aCC---ACCUUU------UCCUGCUUCA--GCGGGAU- -5'
27096 3' -53.1 NC_005832.1 + 78956 0.7 0.737993
Target:  5'- aGGcUGGAc-GGGAUGAGGUUcagGCCCUAc -3'
miRNA:   3'- aCC-ACCUuuUCCUGCUUCAG---CGGGAU- -5'
27096 3' -53.1 NC_005832.1 + 9476 0.7 0.768341
Target:  5'- aGGUGGAAcccggcGGACGAGGaCaCCCUAg -3'
miRNA:   3'- aCCACCUUuu----CCUGCUUCaGcGGGAU- -5'
27096 3' -53.1 NC_005832.1 + 5544 0.69 0.797477
Target:  5'- cGGUGGAgacGAGGGACGGgacGGUgcacagGCCCUc -3'
miRNA:   3'- aCCACCU---UUUCCUGCU---UCAg-----CGGGAu -5'
27096 3' -53.1 NC_005832.1 + 28070 0.69 0.825124
Target:  5'- gGGUGGu-GGGGACcAAGagGCCCUu -3'
miRNA:   3'- aCCACCuuUUCCUGcUUCagCGGGAu -5'
27096 3' -53.1 NC_005832.1 + 5774 0.68 0.833962
Target:  5'- cUGGUGGAcgGGGAUcccGUgGCCCUu -3'
miRNA:   3'- -ACCACCUuuUCCUGcuuCAgCGGGAu -5'
27096 3' -53.1 NC_005832.1 + 6494 0.68 0.842597
Target:  5'- cGGcGGAugacGAGGACGggGUgucugugGCCCUGu -3'
miRNA:   3'- aCCaCCUu---UUCCUGCuuCAg------CGGGAU- -5'
27096 3' -53.1 NC_005832.1 + 54697 0.68 0.867981
Target:  5'- gUGGUGGGcaccuacuccaagguGGGGACGggGUucgaCGCCUg- -3'
miRNA:   3'- -ACCACCUu--------------UUCCUGCuuCA----GCGGGau -5'
27096 3' -53.1 NC_005832.1 + 72530 0.67 0.874936
Target:  5'- gGGUGGAcccGGGGGuCccuuGUCGCCCUu -3'
miRNA:   3'- aCCACCU---UUUCCuGcuu-CAGCGGGAu -5'
27096 3' -53.1 NC_005832.1 + 40829 0.67 0.889687
Target:  5'- gGGUcGAGAGGGGCGAcAGgauaGCCCa- -3'
miRNA:   3'- aCCAcCUUUUCCUGCU-UCag--CGGGau -5'
27096 3' -53.1 NC_005832.1 + 20696 0.67 0.889687
Target:  5'- cGGaucgGGAgcAGAGuACGAGGcCGCCCUGg -3'
miRNA:   3'- aCCa---CCU--UUUCcUGCUUCaGCGGGAU- -5'
27096 3' -53.1 NC_005832.1 + 92456 0.67 0.889687
Target:  5'- gUGGUGGAcgacGAGGACGAcgaggaccAGUCGgaCUAc -3'
miRNA:   3'- -ACCACCUu---UUCCUGCU--------UCAGCggGAU- -5'
27096 3' -53.1 NC_005832.1 + 89668 0.67 0.889687
Target:  5'- aGGUGGAcucgaAGGGGACGAcccUCaCCCUGu -3'
miRNA:   3'- aCCACCU-----UUUCCUGCUuc-AGcGGGAU- -5'
27096 3' -53.1 NC_005832.1 + 79972 0.67 0.889687
Target:  5'- aGGUGGAGgaggGAGGugGggGaC-CCCa- -3'
miRNA:   3'- aCCACCUU----UUCCugCuuCaGcGGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.