Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27096 | 3' | -53.1 | NC_005832.1 | + | 6494 | 0.68 | 0.842597 |
Target: 5'- cGGcGGAugacGAGGACGggGUgucugugGCCCUGu -3' miRNA: 3'- aCCaCCUu---UUCCUGCuuCAg------CGGGAU- -5' |
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27096 | 3' | -53.1 | NC_005832.1 | + | 5774 | 0.68 | 0.833962 |
Target: 5'- cUGGUGGAcgGGGAUcccGUgGCCCUu -3' miRNA: 3'- -ACCACCUuuUCCUGcuuCAgCGGGAu -5' |
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27096 | 3' | -53.1 | NC_005832.1 | + | 28070 | 0.69 | 0.825124 |
Target: 5'- gGGUGGu-GGGGACcAAGagGCCCUu -3' miRNA: 3'- aCCACCuuUUCCUGcUUCagCGGGAu -5' |
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27096 | 3' | -53.1 | NC_005832.1 | + | 5544 | 0.69 | 0.797477 |
Target: 5'- cGGUGGAgacGAGGGACGGgacGGUgcacagGCCCUc -3' miRNA: 3'- aCCACCU---UUUCCUGCU---UCAg-----CGGGAu -5' |
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27096 | 3' | -53.1 | NC_005832.1 | + | 9476 | 0.7 | 0.768341 |
Target: 5'- aGGUGGAAcccggcGGACGAGGaCaCCCUAg -3' miRNA: 3'- aCCACCUUuu----CCUGCUUCaGcGGGAU- -5' |
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27096 | 3' | -53.1 | NC_005832.1 | + | 78956 | 0.7 | 0.737993 |
Target: 5'- aGGcUGGAc-GGGAUGAGGUUcagGCCCUAc -3' miRNA: 3'- aCC-ACCUuuUCCUGCUUCAG---CGGGAU- -5' |
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27096 | 3' | -53.1 | NC_005832.1 | + | 27327 | 0.7 | 0.737993 |
Target: 5'- aGGcucUGGAGAuuguggGGGACGGAGUggCGUCCUAc -3' miRNA: 3'- aCC---ACCUUU------UCCUGCUUCA--GCGGGAU- -5' |
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27096 | 3' | -53.1 | NC_005832.1 | + | 68048 | 0.71 | 0.717232 |
Target: 5'- aGGUGGAggaGAGGGGCGGAGgCaUCCUGa -3' miRNA: 3'- aCCACCU---UUUCCUGCUUCaGcGGGAU- -5' |
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27096 | 3' | -53.1 | NC_005832.1 | + | 60056 | 0.71 | 0.706725 |
Target: 5'- ---aGGAGAGGGACGuAAGUCucuGCCCUc -3' miRNA: 3'- accaCCUUUUCCUGC-UUCAG---CGGGAu -5' |
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27096 | 3' | -53.1 | NC_005832.1 | + | 32250 | 0.76 | 0.445403 |
Target: 5'- gUGGU-GAGGGGGGCGAGGcugacCGCCCUAg -3' miRNA: 3'- -ACCAcCUUUUCCUGCUUCa----GCGGGAU- -5' |
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27096 | 3' | -53.1 | NC_005832.1 | + | 11544 | 0.79 | 0.30846 |
Target: 5'- cUGGUGGccAAAGG-CGggGUCGUCCUGg -3' miRNA: 3'- -ACCACCu-UUUCCuGCuuCAGCGGGAU- -5' |
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27096 | 3' | -53.1 | NC_005832.1 | + | 5427 | 0.79 | 0.30846 |
Target: 5'- aGGUGGAcGAGGugGggGU-GCCCg- -3' miRNA: 3'- aCCACCUuUUCCugCuuCAgCGGGau -5' |
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27096 | 3' | -53.1 | NC_005832.1 | + | 72250 | 1.07 | 0.004153 |
Target: 5'- gUGGUGGAAAAGGACGAAGUCGCCCUAg -3' miRNA: 3'- -ACCACCUUUUCCUGCUUCAGCGGGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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